Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.gibberellin.biosynthesis.ent-kaurene synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyon Bd5 1 CH_bdi_53 4 15 0.000000000960098
Eragrostis curvula Contig30 1 CH_ecu_283 3 4 0.000000180389
Elaeis guineensis p5_sc00010 1 CH_egu_12 4 4 0.00000000000255085
Hordeum vulgare chr2H 1 CH_hvu_83 4 8 0.000000000491185
Miscanthus sinensis Chr11 1 CH_msi_505 2 2 0.000321989
Miscanthus sinensis Chr12 1 CH_msi_506 2 2 0.000321989
Oryza brachyantha 4 1 CH_obr_82 3 3 0.000000107046
Oryza sativa ssp. indica Chr4 1 CH_osaindica_153 3 4 0.00000134494
Oryza sativa Kitaake Chr4 1 CH_osak_211 3 3 0.000000784122
Oryza sativa ssp. japonica chr04 1 CH_osa_126 3 3 0.00000035144
Oropetium thomaeum Chromosome_6 1 CH_oth_63 3 3 0.0000000760112
Phyllostachys edulis hic_scaffold_23 1 CH_ped_283 2 2 0.0000407456
Panicum hallii Chr07 1 CH_pha_366 2 2 0.000348665
Populus trichocarpa Chr08 1 CH_ptr_310 2 2 0.0000578001
Sorghum bicolor Chr06 1 CH_sbi_346 2 2 0.000176005
Secale cereale GWHASIY00000002 1 CH_sce_243 4 21 0.000000213113
Setaria italica scaffold_7 1 CH_sit_401 2 2 0.00034826
Setaria viridis Chr_07 1 CH_svi_448 2 2 0.000521785
Triticum aestivum Chr2D 1 CH_tae_355 4 5 0.00000000124196
Triticum aestivum Chr2A 1 CH_tae_391 4 6 0.00000000372526
Triticum dicoccoides 2A 1 CH_tdi_208 3 5 0.000000462583
Triticum turgidum chr2A 1 CH_ttu_146 4 5 0.0000000017746
Zea mays B73 2 1 CH_zma_63 3 3 0.0000000392171
Brachypodium distachyon Bd5 2 CH_bdi_53 4 15 0.000000000960098
Eragrostis curvula Contig30 2 CH_ecu_283 3 4 0.000000180389
Elaeis guineensis p5_sc00010 2 CH_egu_12 4 4 0.00000000000255085
Hordeum vulgare chr2H 2 CH_hvu_83 4 8 0.000000000491185
Miscanthus sinensis Chr11 2 CH_msi_505 2 2 0.000321989
Miscanthus sinensis Chr12 2 CH_msi_506 2 2 0.000321989
Oryza brachyantha 4 2 CH_obr_82 3 3 0.000000107046
Oryza sativa ssp. indica Chr4 2 CH_osaindica_153 3 4 0.00000134494
Oryza sativa Kitaake Chr4 2 CH_osak_211 3 3 0.000000784122
Oryza sativa ssp. japonica chr04 2 CH_osa_126 3 3 0.00000035144
Oropetium thomaeum Chromosome_6 2 CH_oth_63 3 3 0.0000000760112
Phyllostachys edulis hic_scaffold_23 2 CH_ped_283 2 2 0.0000407456
Panicum hallii Chr07 2 CH_pha_366 2 2 0.000348665
Populus trichocarpa Chr08 2 CH_ptr_310 2 2 0.0000578001
Sorghum bicolor Chr06 2 CH_sbi_346 2 2 0.000176005
Secale cereale GWHASIY00000002 2 CH_sce_243 4 21 0.000000213113
Setaria italica scaffold_7 2 CH_sit_401 2 2 0.00034826
Setaria viridis Chr_07 2 CH_svi_448 2 2 0.000521785
Triticum aestivum Chr2D 2 CH_tae_355 4 5 0.00000000124196
Triticum aestivum Chr2A 2 CH_tae_391 4 6 0.00000000372526
Triticum dicoccoides 2A 2 CH_tdi_208 3 5 0.000000462583
Triticum turgidum chr2A 2 CH_ttu_146 4 5 0.0000000017746
Zea mays B73 2 2 CH_zma_63 3 3 0.0000000392171

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001