Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid carboxyl methyltransferase (MES17)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyon Bd4 1 CH_bdi_196 2 2 0.0000616675
Hordeum vulgare chr4H 1 CH_hvu_277 2 2 0.0000405836
Oryza alta GWHAZTO00000012 1 CH_oal_513 2 2 0.000120908
Oryza sativa ssp. indica Chr12 1 CH_osaindica_287 2 2 0.000154983
Oryza sativa Kitaake Chr12 1 CH_osak_368 2 2 0.000168857
Oryza sativa ssp. japonica chr11 1 CH_osa_314 2 2 0.000316874
Oryza sativa ssp. japonica chr12 1 CH_osa_315 2 2 0.000316874
Panicum hallii Chr03 1 CH_pha_314 2 2 0.000174332
Sorghum bicolor Chr05 1 CH_sbi_287 2 2 0.0000586682
Secale cereale GWHASIY00000004 1 CH_sce_496 2 2 0.000045529
Sequoiadendron giganteum chr5 1 CH_sgi_1114 2 2 0.000146145
Setaria italica scaffold_7 1 CH_sit_357 2 2 0.00017413
Triticum aestivum Chr4B 1 CH_tae_1222 2 2 0.000280599
Triticum aestivum Chr4A 1 CH_tae_1223 2 2 0.000280599
Triticum aestivum Chr4D 1 CH_tae_1224 2 2 0.000280599
Triticum dicoccoides 4A 1 CH_tdi_410 2 2 0.0000890551
Brachypodium distachyon Bd4 2 CH_bdi_196 2 2 0.0000616675
Hordeum vulgare chr4H 2 CH_hvu_277 2 2 0.0000405836
Oryza alta GWHAZTO00000012 2 CH_oal_513 2 2 0.000120908
Oryza sativa ssp. indica Chr12 2 CH_osaindica_287 2 2 0.000154983
Oryza sativa Kitaake Chr12 2 CH_osak_368 2 2 0.000168857
Oryza sativa ssp. japonica chr11 2 CH_osa_314 2 2 0.000316874
Oryza sativa ssp. japonica chr12 2 CH_osa_315 2 2 0.000316874
Panicum hallii Chr03 2 CH_pha_314 2 2 0.000174332
Sorghum bicolor Chr05 2 CH_sbi_287 2 2 0.0000586682
Secale cereale GWHASIY00000004 2 CH_sce_496 2 2 0.000045529
Sequoiadendron giganteum chr5 2 CH_sgi_1114 2 2 0.000146145
Setaria italica scaffold_7 2 CH_sit_357 2 2 0.00017413
Triticum aestivum Chr4B 2 CH_tae_1222 2 2 0.000280599
Triticum aestivum Chr4A 2 CH_tae_1223 2 2 0.000280599
Triticum aestivum Chr4D 2 CH_tae_1224 2 2 0.000280599
Triticum dicoccoides 4A 2 CH_tdi_410 2 2 0.0000890551

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001