Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CEP-peptide activity.CEP-precursor polypeptide

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 5D 1 CH_ata_230 2 2 0.000147725
Amborella trichopoda AmTr_v1.0_scaffold00157 1 CH_atr_35 5 7 0.000000000000351257
Brachypodium distachyon Bd1 1 CH_bdi_106 3 4 0.000000456314
Glycine max Gm11 1 CH_gma_108 4 4 0.00000000207524
Glycine max Gm01 1 CH_gma_109 4 4 0.00000000207524
Glycine max Gm16 1 CH_gma_252 3 3 0.00000497029
Glycine max Gm05 1 CH_gma_253 3 3 0.00000497029
Glycine max Gm17 1 CH_gma_36 6 7 0.00000000000000219697
Miscanthus sinensis Chr01 1 CH_msi_266 3 6 0.00000684021
Oryza alta GWHAZTO00000003 1 CH_oal_210 3 5 0.000000730853
Oryza alta GWHAZTO00000015 1 CH_oal_301 3 10 0.00000876747
Oryza brachyantha 3 1 CH_obr_73 3 3 0.0000000535231
Oryza sativa Kitaake Chr3 1 CH_osak_446 2 2 0.000562857
Oropetium thomaeum Chromosome_4 1 CH_oth_79 3 3 0.000000266039
Phyllostachys edulis hic_scaffold_13 1 CH_ped_321 2 2 0.000122237
Panicum hallii Chr02 1 CH_pha_418 2 2 0.000871662
Panicum hallii Chr09 1 CH_pha_419 2 2 0.000871662
Populus trichocarpa Chr07 1 CH_ptr_94 4 4 0.0000000000405549
Sorghum bicolor Chr01 1 CH_sbi_65 4 4 0.0000000000212049
Secale cereale GWHASIY00000005 1 CH_sce_832 2 2 0.00045529
Setaria italica scaffold_9 1 CH_sit_70 4 4 0.0000000000410691
Setaria viridis Chr_09 1 CH_svi_69 4 4 0.0000000000537031
Zoysia japonica ssp. nagirizaki Zjn_sc00106.1 1 CH_zjn_233 2 2 0.0007769
Aegilops tauschii 5D 2 CH_ata_230 2 2 0.000147725
Amborella trichopoda AmTr_v1.0_scaffold00157 2 CH_atr_35 5 7 0.000000000000351257
Brachypodium distachyon Bd1 2 CH_bdi_106 3 4 0.000000456314
Glycine max Gm11 2 CH_gma_108 4 4 0.00000000207524
Glycine max Gm01 2 CH_gma_109 4 4 0.00000000207524
Glycine max Gm16 2 CH_gma_252 3 3 0.00000497029
Glycine max Gm05 2 CH_gma_253 3 3 0.00000497029
Glycine max Gm17 2 CH_gma_36 6 7 0.00000000000000219697
Miscanthus sinensis Chr01 2 CH_msi_266 3 6 0.00000684021
Oryza alta GWHAZTO00000003 2 CH_oal_210 3 5 0.000000730853
Oryza alta GWHAZTO00000015 2 CH_oal_301 3 10 0.00000876747
Oryza brachyantha 3 2 CH_obr_73 3 3 0.0000000535231
Oryza sativa Kitaake Chr3 2 CH_osak_446 2 2 0.000562857
Oropetium thomaeum Chromosome_4 2 CH_oth_79 3 3 0.000000266039
Phyllostachys edulis hic_scaffold_13 2 CH_ped_321 2 2 0.000122237
Panicum hallii Chr02 2 CH_pha_418 2 2 0.000871662
Panicum hallii Chr09 2 CH_pha_419 2 2 0.000871662
Populus trichocarpa Chr07 2 CH_ptr_94 4 4 0.0000000000405549
Sorghum bicolor Chr01 2 CH_sbi_65 4 4 0.0000000000212049
Secale cereale GWHASIY00000005 2 CH_sce_832 2 2 0.00045529
Setaria italica scaffold_9 2 CH_sit_70 4 4 0.0000000000410691
Setaria viridis Chr_09 2 CH_svi_69 4 4 0.0000000000537031
Zoysia japonica ssp. nagirizaki Zjn_sc00106.1 2 CH_zjn_233 2 2 0.0007769

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001