Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CLE-peptide activity.CLE-precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aegilops tauschii | 7D | 1 | CH_ata_164 | 3 | 3 | 0.0000106388 |
| Aegilops tauschii | 1D | 1 | CH_ata_18 | 6 | 6 | 0.00000000000000192868 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_145 | 4 | 10 | 0.000000259567 |
| Eragrostis curvula | 3 | 1 | CH_ecu_346 | 3 | 3 | 0.0000012628 |
| Hordeum vulgare | chr3H | 1 | CH_hvu_286 | 3 | 5 | 0.0000499708 |
| Hordeum vulgare | chr1H | 1 | CH_hvu_412 | 3 | 9 | 0.000419184 |
| Miscanthus sinensis | Chr19 | 1 | CH_msi_526 | 3 | 5 | 0.000430529 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_177 | 3 | 3 | 0.0000169863 |
| Oropetium thomaeum | Chromosome_2 | 1 | CH_oth_51 | 4 | 4 | 0.0000000189933 |
| Panicum hallii | Chr05 | 1 | CH_pha_336 | 5 | 67 | 0.000187651 |
| Populus trichocarpa | Chr19 | 1 | CH_ptr_483 | 3 | 5 | 0.000574306 |
| Sorghum bicolor | Chr09 | 1 | CH_sbi_244 | 3 | 3 | 0.0000281698 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_25 | 8 | 10 | 6.77838e-19 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_437 | 3 | 3 | 0.0000356961 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_438 | 3 | 3 | 0.0000356961 |
| Secale cereale | GWHASIY00000003 | 1 | CH_sce_648 | 3 | 4 | 0.000142686 |
| Setaria italica | scaffold_5 | 1 | CH_sit_320 | 3 | 4 | 0.000100199 |
| Saccharum spontaneum | Chr7A | 1 | CH_ssp_438 | 3 | 3 | 0.00000383821 |
| Setaria viridis | Chr_05 | 1 | CH_svi_307 | 3 | 4 | 0.0000890744 |
| Triticum aestivum | Chr1B | 1 | CH_tae_101 | 7 | 8 | 1.71294e-16 |
| Triticum aestivum | Chr3A | 1 | CH_tae_1167 | 3 | 4 | 0.000230267 |
| Triticum aestivum | Chr3B | 1 | CH_tae_1168 | 3 | 4 | 0.000230267 |
| Triticum aestivum | Chr3D | 1 | CH_tae_1169 | 3 | 4 | 0.000230267 |
| Triticum aestivum | Chr1D | 1 | CH_tae_147 | 6 | 6 | 0.0000000000000279347 |
| Triticum aestivum | Chr1A | 1 | CH_tae_485 | 4 | 4 | 0.000000045796 |
| Triticum aestivum | Chr7D | 1 | CH_tae_994 | 3 | 3 | 0.0000576017 |
| Triticum turgidum | chr1A | 1 | CH_ttu_113 | 5 | 8 | 0.000000000150892 |
| Triticum turgidum | chr1B | 1 | CH_ttu_81 | 5 | 5 | 0.00000000000269789 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00027.1 | 1 | CH_zjn_3 | 7 | 26 | 0.00000000000044355 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00018.1 | 1 | CH_zjn_75 | 3 | 3 | 0.0000101829 |
| Aegilops tauschii | 7D | 2 | CH_ata_164 | 3 | 3 | 0.0000106388 |
| Aegilops tauschii | 1D | 2 | CH_ata_18 | 6 | 6 | 0.00000000000000192868 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_145 | 4 | 10 | 0.000000259567 |
| Eragrostis curvula | 3 | 2 | CH_ecu_346 | 3 | 3 | 0.0000012628 |
| Hordeum vulgare | chr3H | 2 | CH_hvu_286 | 3 | 5 | 0.0000499708 |
| Hordeum vulgare | chr1H | 2 | CH_hvu_412 | 3 | 9 | 0.000419184 |
| Miscanthus sinensis | Chr19 | 2 | CH_msi_526 | 3 | 5 | 0.000430529 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_177 | 3 | 3 | 0.0000169863 |
| Oropetium thomaeum | Chromosome_2 | 2 | CH_oth_51 | 4 | 4 | 0.0000000189933 |
| Panicum hallii | Chr05 | 2 | CH_pha_336 | 5 | 67 | 0.000187651 |
| Populus trichocarpa | Chr19 | 2 | CH_ptr_483 | 3 | 5 | 0.000574306 |
| Sorghum bicolor | Chr09 | 2 | CH_sbi_244 | 3 | 3 | 0.0000281698 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_25 | 8 | 10 | 6.77838e-19 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_437 | 3 | 3 | 0.0000356961 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_438 | 3 | 3 | 0.0000356961 |
| Secale cereale | GWHASIY00000003 | 2 | CH_sce_648 | 3 | 4 | 0.000142686 |
| Setaria italica | scaffold_5 | 2 | CH_sit_320 | 3 | 4 | 0.000100199 |
| Saccharum spontaneum | Chr7A | 2 | CH_ssp_438 | 3 | 3 | 0.00000383821 |
| Setaria viridis | Chr_05 | 2 | CH_svi_307 | 3 | 4 | 0.0000890744 |
| Triticum aestivum | Chr1B | 2 | CH_tae_101 | 7 | 8 | 1.71294e-16 |
| Triticum aestivum | Chr3A | 2 | CH_tae_1167 | 3 | 4 | 0.000230267 |
| Triticum aestivum | Chr3B | 2 | CH_tae_1168 | 3 | 4 | 0.000230267 |
| Triticum aestivum | Chr3D | 2 | CH_tae_1169 | 3 | 4 | 0.000230267 |
| Triticum aestivum | Chr1D | 2 | CH_tae_147 | 6 | 6 | 0.0000000000000279347 |
| Triticum aestivum | Chr1A | 2 | CH_tae_485 | 4 | 4 | 0.000000045796 |
| Triticum aestivum | Chr7D | 2 | CH_tae_994 | 3 | 3 | 0.0000576017 |
| Triticum turgidum | chr1A | 2 | CH_ttu_113 | 5 | 8 | 0.000000000150892 |
| Triticum turgidum | chr1B | 2 | CH_ttu_81 | 5 | 5 | 0.00000000000269789 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00027.1 | 2 | CH_zjn_3 | 7 | 26 | 0.00000000000044355 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00018.1 | 2 | CH_zjn_75 | 3 | 3 | 0.0000101829 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |