Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.RALF/RALFL-precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_100 | 4 | 5 | 0.0000000184623 |
| Amborella trichopoda | AmTr_v1.0_scaffold00067 | 1 | CH_atr_140 | 3 | 5 | 0.0000113543 |
| Eragrostis curvula | 7 | 1 | CH_ecu_404 | 4 | 31 | 0.00000548191 |
| Glycine max | Gm08 | 1 | CH_gma_409 | 3 | 7 | 0.000220913 |
| Oryza brachyantha | 7 | 1 | CH_obr_103 | 3 | 4 | 0.000000749234 |
| Oryza sativa Kitaake | Chr7 | 1 | CH_osak_110 | 4 | 4 | 0.000000000973697 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_176 | 3 | 5 | 0.0000152216 |
| Populus trichocarpa | Chr18 | 1 | CH_ptr_132 | 4 | 4 | 0.00000000423799 |
| Populus trichocarpa | Chr17 | 1 | CH_ptr_330 | 3 | 5 | 0.000077108 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_464 | 3 | 8 | 0.000431234 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_1305 | 2 | 2 | 0.000487151 |
| Zea mays B73 | 3 | 1 | CH_zma_116 | 3 | 3 | 0.00000603944 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_100 | 4 | 5 | 0.0000000184623 |
| Amborella trichopoda | AmTr_v1.0_scaffold00067 | 2 | CH_atr_140 | 3 | 5 | 0.0000113543 |
| Eragrostis curvula | 7 | 2 | CH_ecu_404 | 4 | 31 | 0.00000548191 |
| Glycine max | Gm08 | 2 | CH_gma_409 | 3 | 7 | 0.000220913 |
| Oryza brachyantha | 7 | 2 | CH_obr_103 | 3 | 4 | 0.000000749234 |
| Oryza sativa Kitaake | Chr7 | 2 | CH_osak_110 | 4 | 4 | 0.000000000973697 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_176 | 3 | 5 | 0.0000152216 |
| Populus trichocarpa | Chr18 | 2 | CH_ptr_132 | 4 | 4 | 0.00000000423799 |
| Populus trichocarpa | Chr17 | 2 | CH_ptr_330 | 3 | 5 | 0.000077108 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_464 | 3 | 8 | 0.000431234 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_1305 | 2 | 2 | 0.000487151 |
| Zea mays B73 | 3 | 2 | CH_zma_116 | 3 | 3 | 0.00000603944 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |