Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.DVL/ROT-peptide activity.DVL/RTFL-precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr5 | 1 | CH_asa_865 | 2 | 2 | 0.000813827 |
| Aegilops tauschii | 1D | 1 | CH_ata_13 | 8 | 19 | 3.39117e-18 |
| Brachypodium distachyon | Bd2 | 1 | CH_bdi_133 | 3 | 3 | 0.00000319452 |
| Eragrostis curvula | 3 | 1 | CH_ecu_156 | 5 | 26 | 0.000000000513885 |
| Eragrostis curvula | 6 | 1 | CH_ecu_613 | 3 | 15 | 0.000169019 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_86 | 4 | 9 | 0.00000000621007 |
| Miscanthus sinensis | Chr05 | 1 | CH_msi_109 | 4 | 4 | 0.00000000589951 |
| Miscanthus sinensis | Chr16 | 1 | CH_msi_397 | 3 | 5 | 0.000110947 |
| Miscanthus sinensis | Chr03 | 1 | CH_msi_398 | 3 | 5 | 0.000110947 |
| Miscanthus sinensis | Chr04 | 1 | CH_msi_86 | 5 | 9 | 0.000000000382311 |
| Oryza brachyantha | 9 | 1 | CH_obr_114 | 3 | 4 | 0.00000194824 |
| Oryza sativa Kitaake | Chr1 | 1 | CH_osak_154 | 4 | 6 | 0.0000000388508 |
| Oryza sativa Kitaake | Chr9 | 1 | CH_osak_261 | 3 | 4 | 0.0000216619 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_151 | 3 | 3 | 0.00000284499 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_67 | 4 | 5 | 0.00000000525746 |
| Oropetium thomaeum | Chromosome_2 | 1 | CH_oth_119 | 3 | 4 | 0.0000206666 |
| Oropetium thomaeum | Chromosome_3 | 1 | CH_oth_131 | 3 | 5 | 0.0000516453 |
| Panicum hallii | Chr05 | 1 | CH_pha_109 | 4 | 5 | 0.0000000312648 |
| Panicum hallii | Chr02 | 1 | CH_pha_208 | 3 | 3 | 0.0000102525 |
| Sorghum bicolor | Chr03 | 1 | CH_sbi_304 | 3 | 5 | 0.0000913526 |
| Sorghum bicolor | Chr02 | 1 | CH_sbi_63 | 5 | 6 | 0.0000000000179337 |
| Setaria italica | scaffold_2 | 1 | CH_sit_108 | 4 | 4 | 0.0000000102966 |
| Setaria italica | scaffold_5 | 1 | CH_sit_249 | 3 | 3 | 0.0000147821 |
| Setaria italica | scaffold_5 | 1 | CH_sit_55 | 5 | 5 | 0.00000000000687356 |
| Setaria viridis | Chr_05 | 1 | CH_svi_56 | 5 | 6 | 0.0000000000141737 |
| Setaria viridis | Chr_02 | 1 | CH_svi_74 | 5 | 8 | 0.000000000132172 |
| Triticum aestivum | Chr5D | 1 | CH_tae_1016 | 3 | 4 | 0.0000755348 |
| Triticum aestivum | Chr5B | 1 | CH_tae_446 | 4 | 4 | 0.0000000102487 |
| Triticum aestivum | Chr1D | 1 | CH_tae_909 | 3 | 3 | 0.0000188916 |
| Triticum aestivum | Chr3A | 1 | CH_tae_910 | 3 | 3 | 0.0000188916 |
| Triticum dicoccoides | 1A | 1 | CH_tdi_11 | 9 | 12 | 5.71322e-22 |
| Triticum dicoccoides | 5A | 1 | CH_tdi_149 | 4 | 4 | 0.0000000196119 |
| Triticum dicoccoides | 1B | 1 | CH_tdi_18 | 9 | 19 | 2.38932e-19 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_349 | 3 | 3 | 0.0000275269 |
| Allium sativum | chr5 | 2 | CH_asa_865 | 2 | 2 | 0.000813827 |
| Aegilops tauschii | 1D | 2 | CH_ata_13 | 8 | 19 | 3.39117e-18 |
| Brachypodium distachyon | Bd2 | 2 | CH_bdi_133 | 3 | 3 | 0.00000319452 |
| Eragrostis curvula | 3 | 2 | CH_ecu_156 | 5 | 26 | 0.000000000513885 |
| Eragrostis curvula | 6 | 2 | CH_ecu_613 | 3 | 15 | 0.000169019 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_86 | 4 | 9 | 0.00000000621007 |
| Miscanthus sinensis | Chr05 | 2 | CH_msi_109 | 4 | 4 | 0.00000000589951 |
| Miscanthus sinensis | Chr16 | 2 | CH_msi_397 | 3 | 5 | 0.000110947 |
| Miscanthus sinensis | Chr03 | 2 | CH_msi_398 | 3 | 5 | 0.000110947 |
| Miscanthus sinensis | Chr04 | 2 | CH_msi_86 | 5 | 9 | 0.000000000382311 |
| Oryza brachyantha | 9 | 2 | CH_obr_114 | 3 | 4 | 0.00000194824 |
| Oryza sativa Kitaake | Chr1 | 2 | CH_osak_154 | 4 | 6 | 0.0000000388508 |
| Oryza sativa Kitaake | Chr9 | 2 | CH_osak_261 | 3 | 4 | 0.0000216619 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_151 | 3 | 3 | 0.00000284499 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_67 | 4 | 5 | 0.00000000525746 |
| Oropetium thomaeum | Chromosome_2 | 2 | CH_oth_119 | 3 | 4 | 0.0000206666 |
| Oropetium thomaeum | Chromosome_3 | 2 | CH_oth_131 | 3 | 5 | 0.0000516453 |
| Panicum hallii | Chr05 | 2 | CH_pha_109 | 4 | 5 | 0.0000000312648 |
| Panicum hallii | Chr02 | 2 | CH_pha_208 | 3 | 3 | 0.0000102525 |
| Sorghum bicolor | Chr03 | 2 | CH_sbi_304 | 3 | 5 | 0.0000913526 |
| Sorghum bicolor | Chr02 | 2 | CH_sbi_63 | 5 | 6 | 0.0000000000179337 |
| Setaria italica | scaffold_2 | 2 | CH_sit_108 | 4 | 4 | 0.0000000102966 |
| Setaria italica | scaffold_5 | 2 | CH_sit_249 | 3 | 3 | 0.0000147821 |
| Setaria italica | scaffold_5 | 2 | CH_sit_55 | 5 | 5 | 0.00000000000687356 |
| Setaria viridis | Chr_05 | 2 | CH_svi_56 | 5 | 6 | 0.0000000000141737 |
| Setaria viridis | Chr_02 | 2 | CH_svi_74 | 5 | 8 | 0.000000000132172 |
| Triticum aestivum | Chr5D | 2 | CH_tae_1016 | 3 | 4 | 0.0000755348 |
| Triticum aestivum | Chr5B | 2 | CH_tae_446 | 4 | 4 | 0.0000000102487 |
| Triticum aestivum | Chr1D | 2 | CH_tae_909 | 3 | 3 | 0.0000188916 |
| Triticum aestivum | Chr3A | 2 | CH_tae_910 | 3 | 3 | 0.0000188916 |
| Triticum dicoccoides | 1A | 2 | CH_tdi_11 | 9 | 12 | 5.71322e-22 |
| Triticum dicoccoides | 5A | 2 | CH_tdi_149 | 4 | 4 | 0.0000000196119 |
| Triticum dicoccoides | 1B | 2 | CH_tdi_18 | 9 | 19 | 2.38932e-19 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_349 | 3 | 3 | 0.0000275269 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |