Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.STIG1-peptide activity.STIG1/GRI-precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Allium sativum | chr7_1 | 1 | CH_asa_273 | 3 | 3 | 0.00000256821 |
| Allium sativum | chr1 | 1 | CH_asa_345 | 3 | 5 | 0.0000256684 |
| Allium sativum | chr8 | 1 | CH_asa_67 | 5 | 6 | 0.00000000000157342 |
| Calamus simplicifolius | scaffold4 | 1 | CH_calsi_59 | 3 | 4 | 0.000000108159 |
| Digitaria exilis | Dexi_CM05836_chr03A | 1 | CH_dex_203 | 3 | 3 | 0.000000201047 |
| Digitaria exilis | Dexi_CM05836_chr03B | 1 | CH_dex_204 | 3 | 3 | 0.000000201047 |
| Elaeis guineensis | EG5.1_Chr3 | 1 | CH_egu_304 | 2 | 2 | 0.000947329 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_3 | 9 | 11 | 3.15682e-29 |
| Marchantia polymorpha | scaffold_117 | 1 | CH_mpo_4 | 9 | 9 | 1.5279e-24 |
| Marchantia polymorpha | scaffold_48 | 1 | CH_mpo_57 | 3 | 3 | 0.0000149306 |
| Oryza alta | GWHAZTO00000017 | 1 | CH_oal_111 | 4 | 17 | 0.00000000735714 |
| Oryza alta | GWHAZTO00000005 | 1 | CH_oal_300 | 3 | 10 | 0.00000843867 |
| Oryza sativa Kitaake | Chr5 | 1 | CH_osak_144 | 3 | 3 | 0.000000019009 |
| Populus trichocarpa | Chr11 | 1 | CH_ptr_141 | 4 | 5 | 0.00000000689206 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_66 | 5 | 5 | 0.000000000000518086 |
| Sorghum bicolor | Chr07 | 1 | CH_sbi_420 | 2 | 2 | 0.000586682 |
| Setaria italica | scaffold_3 | 1 | CH_sit_391 | 2 | 2 | 0.00034826 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_294 | 3 | 9 | 0.0000520325 |
| Spirodela polyrhiza | pseudo25 | 1 | CH_spo_85 | 3 | 4 | 0.00000218113 |
| Setaria viridis | Chr_03 | 1 | CH_svi_486 | 2 | 3 | 0.000939155 |
| Triticum aestivum | Chr6B | 1 | CH_tae_558 | 3 | 3 | 0.000000191068 |
| Triticum aestivum | Chr6A | 1 | CH_tae_559 | 3 | 3 | 0.000000191068 |
| Triticum dicoccoides | 6B | 1 | CH_tdi_486 | 2 | 2 | 0.00029685 |
| Triticum turgidum | chr6B | 1 | CH_ttu_225 | 3 | 3 | 0.000000123076 |
| Zostera marina | scaffold_490 | 1 | CH_zosmarina_150 | 3 | 12 | 0.00025784 |
| Allium sativum | chr7_1 | 2 | CH_asa_273 | 3 | 3 | 0.00000256821 |
| Allium sativum | chr1 | 2 | CH_asa_345 | 3 | 5 | 0.0000256684 |
| Allium sativum | chr8 | 2 | CH_asa_67 | 5 | 6 | 0.00000000000157342 |
| Calamus simplicifolius | scaffold4 | 2 | CH_calsi_59 | 3 | 4 | 0.000000108159 |
| Digitaria exilis | Dexi_CM05836_chr03A | 2 | CH_dex_203 | 3 | 3 | 0.000000201047 |
| Digitaria exilis | Dexi_CM05836_chr03B | 2 | CH_dex_204 | 3 | 3 | 0.000000201047 |
| Elaeis guineensis | EG5.1_Chr3 | 2 | CH_egu_304 | 2 | 2 | 0.000947329 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_3 | 9 | 11 | 3.15682e-29 |
| Marchantia polymorpha | scaffold_117 | 2 | CH_mpo_4 | 9 | 9 | 1.5279e-24 |
| Marchantia polymorpha | scaffold_48 | 2 | CH_mpo_57 | 3 | 3 | 0.0000149306 |
| Oryza alta | GWHAZTO00000017 | 2 | CH_oal_111 | 4 | 17 | 0.00000000735714 |
| Oryza alta | GWHAZTO00000005 | 2 | CH_oal_300 | 3 | 10 | 0.00000843867 |
| Oryza sativa Kitaake | Chr5 | 2 | CH_osak_144 | 3 | 3 | 0.000000019009 |
| Populus trichocarpa | Chr11 | 2 | CH_ptr_141 | 4 | 5 | 0.00000000689206 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_66 | 5 | 5 | 0.000000000000518086 |
| Sorghum bicolor | Chr07 | 2 | CH_sbi_420 | 2 | 2 | 0.000586682 |
| Setaria italica | scaffold_3 | 2 | CH_sit_391 | 2 | 2 | 0.00034826 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_294 | 3 | 9 | 0.0000520325 |
| Spirodela polyrhiza | pseudo25 | 2 | CH_spo_85 | 3 | 4 | 0.00000218113 |
| Setaria viridis | Chr_03 | 2 | CH_svi_486 | 2 | 3 | 0.000939155 |
| Triticum aestivum | Chr6B | 2 | CH_tae_558 | 3 | 3 | 0.000000191068 |
| Triticum aestivum | Chr6A | 2 | CH_tae_559 | 3 | 3 | 0.000000191068 |
| Triticum dicoccoides | 6B | 2 | CH_tdi_486 | 2 | 2 | 0.00029685 |
| Triticum turgidum | chr6B | 2 | CH_ttu_225 | 3 | 3 | 0.000000123076 |
| Zostera marina | scaffold_490 | 2 | CH_zosmarina_150 | 3 | 12 | 0.00025784 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |