Functional clusters

Information

  • Type Gene Ontology
  • Description multicellular organismal process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_316 21 77 0.0000180978
Selenicereus undatus Scaffold_33680 3 CH_sun_171 24 73 0.000266505
Arabidopsis thaliana Chr5 4 CH_ath_316 21 77 0.0000180978
Selenicereus undatus Scaffold_33680 4 CH_sun_171 24 73 0.000266505

Available child term results

Ontology identifier Description Number of clusters
GO:0000578 embryonic axis specification 2
GO:0007060 male meiosis chromosome segregation 4
GO:0007065 male meiosis sister chromatid cohesion 4
GO:0007140 male meiotic nuclear division 2
GO:0007141 male meiosis I 4
GO:0007142 male meiosis II 6
GO:0007143 female meiotic nuclear division 2
GO:0007275 multicellular organism development 14
GO:0007276 gamete generation 2
GO:0007292 female gamete generation 2
GO:0009553 embryo sac development 2
GO:0009555 pollen development 2
GO:0009556 microsporogenesis 2
GO:0009557 antipodal cell differentiation 2
GO:0009559 embryo sac central cell differentiation 2
GO:0009561 megagametogenesis 8
GO:0009704 de-etiolation 2
GO:0009790 embryo development 2
GO:0009791 post-embryonic development 6
GO:0009793 embryo development ending in seed dormancy 26
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009830 cell wall modification involved in abscission 10
GO:0009835 fruit ripening 2
GO:0009838 abscission 14
GO:0009846 pollen germination 2
GO:0009855 determination of bilateral symmetry 2
GO:0009859 pollen hydration 12
GO:0009860 pollen tube growth 14
GO:0009875 pollen-pistil interaction 6
GO:0009901 anther dehiscence 8
GO:0009908 flower development 56
GO:0009909 regulation of flower development 6
GO:0009910 negative regulation of flower development 10
GO:0009915 phloem sucrose loading 2
GO:0009942 longitudinal axis specification 2
GO:0009944 polarity specification of adaxial/abaxial axis 4
GO:0009954 proximal/distal pattern formation 2
GO:0009955 adaxial/abaxial pattern specification 8
GO:0009956 radial pattern formation 6
GO:0009960 endosperm development 16
GO:0010016 shoot system morphogenesis 2
GO:0010029 regulation of seed germination 4
GO:0010030 positive regulation of seed germination 2
GO:0010031 circumnutation 4
GO:0010050 vegetative phase change 6
GO:0010051 xylem and phloem pattern formation 2
GO:0010052 guard cell differentiation 4
GO:0010054 trichoblast differentiation 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010064 embryonic shoot morphogenesis 4
GO:0010071 root meristem specification 6
GO:0010073 meristem maintenance 8
GO:0010074 maintenance of meristem identity 2
GO:0010077 maintenance of inflorescence meristem identity 2
GO:0010082 regulation of root meristem growth 2
GO:0010086 embryonic root morphogenesis 12
GO:0010094 specification of carpel identity 6
GO:0010097 specification of stamen identity 6
GO:0010099 regulation of photomorphogenesis 4
GO:0010102 lateral root morphogenesis 8
GO:0010150 leaf senescence 18
GO:0010152 pollen maturation 8
GO:0010154 fruit development 4
GO:0010183 pollen tube guidance 40
GO:0010187 negative regulation of seed germination 2
GO:0010197 polar nucleus fusion 28
GO:0010198 synergid death 14
GO:0010223 secondary shoot formation 2
GO:0010227 floral organ abscission 4
GO:0010228 vegetative to reproductive phase transition of meristem 20
GO:0010231 maintenance of seed dormancy 4
GO:0010234 anther wall tapetum cell fate specification 12
GO:0010235 guard mother cell cytokinesis 2
GO:0010254 nectary development 2
GO:0010305 leaf vascular tissue pattern formation 18
GO:0010311 lateral root formation 6
GO:0010321 regulation of vegetative phase change 4
GO:0010338 leaf formation 2
GO:0010374 stomatal complex development 4
GO:0010375 stomatal complex patterning 2
GO:0010431 seed maturation 2
GO:0010434 bract formation 6
GO:0010440 stomatal lineage progression 4
GO:0010442 guard cell morphogenesis 22
GO:0010448 vegetative meristem growth 2
GO:0010479 stele development 4
GO:0010480 microsporocyte differentiation 4
GO:0010483 pollen tube reception 2
GO:0010492 maintenance of shoot apical meristem identity 2
GO:0010582 floral meristem determinacy 2
GO:0010584 pollen exine formation 8
GO:0010588 cotyledon vascular tissue pattern formation 4
GO:0010589 leaf proximal/distal pattern formation 2
GO:0010622 specification of ovule identity 2
GO:0010654 apical cell fate commitment 2
GO:0022619 generative cell differentiation 12
GO:0032504 multicellular organism reproduction 2
GO:0032922 circadian regulation of gene expression 2
GO:0035264 multicellular organism growth 6
GO:0035265 organ growth 4
GO:0035670 plant-type ovary development 2
GO:0035987 endodermal cell differentiation 6
GO:0040014 regulation of multicellular organism growth 2
GO:0042335 cuticle development 2
GO:0044706 multi-multicellular organism process 2
GO:0045604 regulation of epidermal cell differentiation 6
GO:0045691 regulation of embryo sac central cell differentiation 4
GO:0045694 regulation of embryo sac egg cell differentiation 2
GO:0045765 regulation of angiogenesis 6
GO:0045995 regulation of embryonic development 16
GO:0046620 regulation of organ growth 2
GO:0046621 negative regulation of organ growth 56
GO:0046622 positive regulation of organ growth 6
GO:0048229 gametophyte development 2
GO:0048235 pollen sperm cell differentiation 18
GO:0048240 sperm capacitation 26
GO:0048263 determination of dorsal identity 4
GO:0048283 indeterminate inflorescence morphogenesis 2
GO:0048314 embryo sac morphogenesis 10
GO:0048317 seed morphogenesis 4
GO:0048354 mucilage biosynthetic process involved in seed coat development 4
GO:0048359 mucilage metabolic process involved in seed coat development 6
GO:0048364 root development 38
GO:0048366 leaf development 12
GO:0048437 floral organ development 2
GO:0048439 flower morphogenesis 2
GO:0048440 carpel development 2
GO:0048444 floral organ morphogenesis 6
GO:0048446 petal morphogenesis 2
GO:0048449 floral organ formation 2
GO:0048451 petal formation 2
GO:0048461 flower structural organization 8
GO:0048462 carpel formation 4
GO:0048481 plant ovule development 2
GO:0048482 plant ovule morphogenesis 2
GO:0048527 lateral root development 6
GO:0048528 post-embryonic root development 2
GO:0048530 fruit morphogenesis 2
GO:0048544 recognition of pollen 748
GO:0048574 long-day photoperiodism, flowering 12
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:0048609 multicellular organismal reproductive process 2
GO:0048629 trichome patterning 8
GO:0048653 anther development 6
GO:0048654 anther morphogenesis 18
GO:0048658 anther wall tapetum development 16
GO:0048700 acquisition of desiccation tolerance in seed 32
GO:0048731 system development 10
GO:0048767 root hair elongation 12
GO:0048768 root hair cell tip growth 4
GO:0048829 root cap development 8
GO:0048830 adventitious root development 8
GO:0048831 regulation of shoot system development 6
GO:0048833 specification of floral organ number 32
GO:0048834 specification of petal number 4
GO:0048868 pollen tube development 8
GO:0050891 multicellular organismal water homeostasis 2
GO:0051239 regulation of multicellular organismal process 2
GO:0051241 negative regulation of multicellular organismal process 2
GO:0055046 microgametogenesis 2
GO:0055047 generative cell mitosis 2
GO:0060320 rejection of self pollen 48
GO:0060321 acceptance of pollen 2
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0060776 simple leaf morphogenesis 6
GO:0060777 compound leaf morphogenesis 8
GO:0060858 vesicle-mediated transport involved in floral organ abscission 2
GO:0060862 negative regulation of floral organ abscission 4
GO:0060866 leaf abscission 4
GO:0061936 fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm 6
GO:0062210 shoot regeneration 6
GO:0062211 root regeneration 12
GO:0065001 specification of axis polarity 2
GO:0080001 mucilage extrusion from seed coat 2
GO:0080022 primary root development 2
GO:0080056 petal vascular tissue pattern formation 2
GO:0080086 stamen filament development 60
GO:0080110 sporopollenin biosynthetic process 4
GO:0080127 fruit septum development 6
GO:0080147 root hair cell development 4
GO:0080159 zygote elongation 20
GO:0080166 stomium development 2
GO:0080172 petal epidermis patterning 8
GO:0080181 lateral root branching 6
GO:0080187 floral organ senescence 2
GO:0090057 root radial pattern formation 6
GO:0090213 regulation of radial pattern formation 4
GO:0090408 phloem nitrate loading 4
GO:0090449 phloem glucosinolate loading 2
GO:0090506 axillary shoot meristem initiation 6
GO:0090567 reproductive shoot system development 2
GO:0090701 specification of plant organ identity 4
GO:0097009 energy homeostasis 4
GO:0097167 circadian regulation of translation 4
GO:0098755 maintenance of seed dormancy by absisic acid 6
GO:0099402 plant organ development 4
GO:0110128 phloem sucrose unloading 6
GO:0140301 pollen-stigma interaction 6
GO:1900032 regulation of trichome patterning 4
GO:1900055 regulation of leaf senescence 8
GO:1900140 regulation of seedling development 4
GO:1901332 negative regulation of lateral root development 18
GO:1901333 positive regulation of lateral root development 4
GO:1901342 regulation of vasculature development 6
GO:1901371 regulation of leaf morphogenesis 2
GO:1902039 negative regulation of seed dormancy process 6
GO:1902455 negative regulation of stem cell population maintenance 2
GO:1902459 positive regulation of stem cell population maintenance 2
GO:1902892 positive regulation of root hair elongation 2
GO:1903224 regulation of endodermal cell differentiation 2
GO:1903942 positive regulation of respiratory gaseous exchange 2
GO:1905421 regulation of plant organ morphogenesis 2
GO:1990058 fruit replum development 4
GO:1990059 fruit valve development 2
GO:1990064 ground tissue pattern formation 54
GO:1990109 rejection of pollen from other species 38
GO:1990110 callus formation 22
GO:2000024 regulation of leaf development 8
GO:2000025 regulation of leaf formation 2
GO:2000028 regulation of photoperiodism, flowering 20
GO:2000032 regulation of secondary shoot formation 4
GO:2000033 regulation of seed dormancy process 54
GO:2000123 positive regulation of stomatal complex development 8
GO:2000280 regulation of root development 2
GO:2000306 positive regulation of photomorphogenesis 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001