Functional clusters

Information

  • Type Gene Ontology
  • Description ground tissue pattern formation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr8 3 CH_acertr_321 2 2 0.000070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 3 CH_arhy_184 4 9 0.000000000152125
Cicer arietinum L. Ca_LG5_v3 3 CH_car_32 3 3 0.0000000908664
Corylus avellana 6 3 CH_cav_319 2 3 0.00023
Citrus clementina scaffold_6 3 CH_ccl_387 2 4 0.000492146
Carya illinoinensis Chr06 3 CH_cil_491 2 6 0.000619771
Cucumis melo chr02 3 CH_cme_268 2 7 0.000667045
Carica papaya supercontig_119 3 CH_cpa_181 2 2 0.0000950661
Cucumis sativus L. chr1 3 CH_csa_194 2 2 0.0000834759
Erythranthe guttata scaffold_12 3 CH_egut_124 5 56 0.00000000481666
Gossypium hirsutum D04 3 CH_ghi_428 2 2 0.0000801047
Gossypium raimondii Chr12 3 CH_gra_331 2 5 0.000536064
Lonicera japonica GWHAAZE00000004 3 CH_lonja_195 3 3 0.00000000537991
Olea europaea scaffold1515 3 CH_oeu_175 2 2 0.0000533789
Oryza sativa ssp. japonica chr08 3 CH_osa_335 2 4 0.000158433
Petunia axillaris Peaxi162Scf00126 3 CH_pax_211 2 2 0.0000703556
Phaseolus vulgaris Chr02 3 CH_pvu_58 4 5 0.000000000029748
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_601 2 2 0.000119596
Sechium edule LG08 3 CH_sed_61 3 3 0.00000000763478
Sequoiadendron giganteum chr3 3 CH_sgi_309 4 6 0.00000000000520253
Solanum lycopersicum SL4.0ch11 3 CH_sly_363 2 2 0.0000586941
Utricularia gibba unitig_8 3 CH_ugi_89 2 2 0.0000820479
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_87 3 3 0.0000000129529
Vigna mungo CM024069.1 3 CH_vmu_24 4 5 0.0000000000040467
Vanilla planifolia CM028150.1 3 CH_vpl_14 7 43 0.00000000000000329702
Vitis vinifera chr15 3 CH_vvi_131 3 4 0.0000000347135
Zea mays 6 3 CH_zma_199 2 2 0.0000511313
Acer truncatum chr8 4 CH_acertr_321 2 2 0.000070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 4 CH_arhy_184 4 9 0.000000000152125
Cicer arietinum L. Ca_LG5_v3 4 CH_car_32 3 3 0.0000000908664
Corylus avellana 6 4 CH_cav_319 2 3 0.00023
Citrus clementina scaffold_6 4 CH_ccl_387 2 4 0.000492146
Carya illinoinensis Chr06 4 CH_cil_491 2 6 0.000619771
Cucumis melo chr02 4 CH_cme_268 2 7 0.000667045
Carica papaya supercontig_119 4 CH_cpa_181 2 2 0.0000950661
Cucumis sativus L. chr1 4 CH_csa_194 2 2 0.0000834759
Erythranthe guttata scaffold_12 4 CH_egut_124 5 56 0.00000000481666
Gossypium hirsutum D04 4 CH_ghi_428 2 2 0.0000801047
Gossypium raimondii Chr12 4 CH_gra_331 2 5 0.000536064
Lonicera japonica GWHAAZE00000004 4 CH_lonja_195 3 3 0.00000000537991
Olea europaea scaffold1515 4 CH_oeu_175 2 2 0.0000533789
Oryza sativa ssp. japonica chr08 4 CH_osa_335 2 4 0.000158433
Petunia axillaris Peaxi162Scf00126 4 CH_pax_211 2 2 0.0000703556
Phaseolus vulgaris Chr02 4 CH_pvu_58 4 5 0.000000000029748
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_601 2 2 0.000119596
Sechium edule LG08 4 CH_sed_61 3 3 0.00000000763478
Sequoiadendron giganteum chr3 4 CH_sgi_309 4 6 0.00000000000520253
Solanum lycopersicum SL4.0ch11 4 CH_sly_363 2 2 0.0000586941
Utricularia gibba unitig_8 4 CH_ugi_89 2 2 0.0000820479
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_87 3 3 0.0000000129529
Vigna mungo CM024069.1 4 CH_vmu_24 4 5 0.0000000000040467
Vanilla planifolia CM028150.1 4 CH_vpl_14 7 43 0.00000000000000329702
Vitis vinifera chr15 4 CH_vvi_131 3 4 0.0000000347135
Zea mays 6 4 CH_zma_199 2 2 0.0000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001