Functional clusters

Information

  • Type Gene Ontology
  • Description flower development

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum sc-15 3 CH_aar_73 6 11 0.000000123263
Arabidopsis lyrata scaffold_7 3 CH_aly_159 5 10 0.0000100931
Arabidopsis lyrata scaffold_4 3 CH_aly_71 6 9 0.0000000139747
Arabidopsis thaliana Chr4 3 CH_ath_38 9 14 0.0000000000000210109
Brassica carinata ChrC09 3 CH_bca_571 5 12 0.0000681815
Brassica napus C01 3 CH_bna_20 10 14 2.14931e-17
Brassica napus C04 3 CH_bna_308 5 9 0.0000062379
Brassica napus A01 3 CH_bna_443 4 5 0.0000735019
Brassica oleracea C1 3 CH_bol_148 5 7 0.000000526381
Camellia sinensis var. sinensis Chr1 3 CH_camsi_531 5 14 0.0000530223
Corylus avellana 5 3 CH_cav_408 7 74 0.000725029
Cardamine hirsuta Chr4 3 CH_chi_253 5 15 0.00012123
Cardamine hirsuta Chr7 3 CH_chi_46 8 12 0.00000000000145568
Capsella rubella scaffold_7 3 CH_cru_41 8 12 0.00000000000315781
Capsella rubella scaffold_4 3 CH_cru_60 9 27 0.000000000128014
Daucus carota DCARv2_Chr1 3 CH_dca_200 4 4 0.0000109308
Eutrema salsugineum scaffold_1 3 CH_esa_46 7 13 0.00000000229941
Gossypium hirsutum D04 3 CH_ghi_203 5 5 0.0000000247749
Gossypium raimondii Chr12 3 CH_gra_108 5 5 0.0000000258367
Nicotiana tabacum Nitab4.5_0000555 3 CH_nta_10 6 9 0.000000000865843
Petunia axillaris Peaxi162Scf00045 3 CH_pax_163 4 5 0.0000221393
Punica granatum NC_045133.1 3 CH_pgr_68 8 15 0.0000000000207556
Quercus lobata 3 3 CH_qlo_433 5 6 0.000000106462
Solanum lycopersicum SL4.0ch08 3 CH_sly_165 6 12 0.0000001515
Schrenkiella parvula ch7-5 3 CH_spa_73 5 8 0.0000035919
Schrenkiella parvula ch4-2 3 CH_spa_96 5 10 0.0000160363
Solanum pennellii Spenn-ch08 3 CH_spe_31 8 11 0.0000000000000223343
Solanum tuberosum ST4.03ch08 3 CH_stu_343 4 5 0.0000221678
Aethionema arabicum sc-15 4 CH_aar_73 6 11 0.000000123263
Arabidopsis lyrata scaffold_7 4 CH_aly_159 5 10 0.0000100931
Arabidopsis lyrata scaffold_4 4 CH_aly_71 6 9 0.0000000139747
Arabidopsis thaliana Chr4 4 CH_ath_38 9 14 0.0000000000000210109
Brassica carinata ChrC09 4 CH_bca_571 5 12 0.0000681815
Brassica napus C01 4 CH_bna_20 10 14 2.14931e-17
Brassica napus C04 4 CH_bna_308 5 9 0.0000062379
Brassica napus A01 4 CH_bna_443 4 5 0.0000735019
Brassica oleracea C1 4 CH_bol_148 5 7 0.000000526381
Camellia sinensis var. sinensis Chr1 4 CH_camsi_531 5 14 0.0000530223
Corylus avellana 5 4 CH_cav_408 7 74 0.000725029
Cardamine hirsuta Chr4 4 CH_chi_253 5 15 0.00012123
Cardamine hirsuta Chr7 4 CH_chi_46 8 12 0.00000000000145568
Capsella rubella scaffold_7 4 CH_cru_41 8 12 0.00000000000315781
Capsella rubella scaffold_4 4 CH_cru_60 9 27 0.000000000128014
Daucus carota DCARv2_Chr1 4 CH_dca_200 4 4 0.0000109308
Eutrema salsugineum scaffold_1 4 CH_esa_46 7 13 0.00000000229941
Gossypium hirsutum D04 4 CH_ghi_203 5 5 0.0000000247749
Gossypium raimondii Chr12 4 CH_gra_108 5 5 0.0000000258367
Nicotiana tabacum Nitab4.5_0000555 4 CH_nta_10 6 9 0.000000000865843
Petunia axillaris Peaxi162Scf00045 4 CH_pax_163 4 5 0.0000221393
Punica granatum NC_045133.1 4 CH_pgr_68 8 15 0.0000000000207556
Quercus lobata 3 4 CH_qlo_433 5 6 0.000000106462
Solanum lycopersicum SL4.0ch08 4 CH_sly_165 6 12 0.0000001515
Schrenkiella parvula ch7-5 4 CH_spa_73 5 8 0.0000035919
Schrenkiella parvula ch4-2 4 CH_spa_96 5 10 0.0000160363
Solanum pennellii Spenn-ch08 4 CH_spe_31 8 11 0.0000000000000223343
Solanum tuberosum ST4.03ch08 4 CH_stu_343 4 5 0.0000221678

Available child term results

Ontology identifier Description Number of clusters
GO:0009901 anther dehiscence 8
GO:0009909 regulation of flower development 6
GO:0009910 negative regulation of flower development 10
GO:0010094 specification of carpel identity 6
GO:0010097 specification of stamen identity 6
GO:0010227 floral organ abscission 4
GO:0010234 anther wall tapetum cell fate specification 12
GO:0010254 nectary development 2
GO:0010480 microsporocyte differentiation 4
GO:0010582 floral meristem determinacy 2
GO:0010622 specification of ovule identity 2
GO:0035670 plant-type ovary development 2
GO:0048437 floral organ development 2
GO:0048439 flower morphogenesis 2
GO:0048440 carpel development 2
GO:0048444 floral organ morphogenesis 6
GO:0048446 petal morphogenesis 2
GO:0048449 floral organ formation 2
GO:0048451 petal formation 2
GO:0048461 flower structural organization 8
GO:0048462 carpel formation 4
GO:0048481 plant ovule development 2
GO:0048482 plant ovule morphogenesis 2
GO:0048653 anther development 6
GO:0048654 anther morphogenesis 18
GO:0048658 anther wall tapetum development 16
GO:0048833 specification of floral organ number 32
GO:0048834 specification of petal number 4
GO:0060858 vesicle-mediated transport involved in floral organ abscission 2
GO:0060862 negative regulation of floral organ abscission 4
GO:0080086 stamen filament development 60
GO:0080166 stomium development 2
GO:0080187 floral organ senescence 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001