Functional clusters

Information

  • Type Gene Ontology
  • Description vegetative to reproductive phase transition of meristem

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-10 3 CH_aar_40 7 8 0.0000000000474704
Arabidopsis lyrata scaffold_6 3 CH_aly_102 5 6 0.000000284182
Brassica napus C09 3 CH_bna_152 5 5 0.0000000180282
Brassica napus A09 3 CH_bna_310 4 4 0.00000651836
Brassica oleracea C9 3 CH_bol_86 5 5 0.00000001043
Brassica rapa A09 3 CH_bra_137 4 4 0.00000742017
Cardamine hirsuta Chr8 3 CH_chi_78 6 7 0.00000000275858
Capsella rubella scaffold_6 3 CH_cru_283 4 6 0.00025241
Capsella rubella scaffold_6 3 CH_cru_77 6 7 0.00000000281686
Eutrema salsugineum scaffold_3 3 CH_esa_130 4 4 0.0000170125
Aethionema arabicum LG-10 4 CH_aar_40 7 8 0.0000000000474704
Arabidopsis lyrata scaffold_6 4 CH_aly_102 5 6 0.000000284182
Brassica napus C09 4 CH_bna_152 5 5 0.0000000180282
Brassica napus A09 4 CH_bna_310 4 4 0.00000651836
Brassica oleracea C9 4 CH_bol_86 5 5 0.00000001043
Brassica rapa A09 4 CH_bra_137 4 4 0.00000742017
Cardamine hirsuta Chr8 4 CH_chi_78 6 7 0.00000000275858
Capsella rubella scaffold_6 4 CH_cru_283 4 6 0.00025241
Capsella rubella scaffold_6 4 CH_cru_77 6 7 0.00000000281686
Eutrema salsugineum scaffold_3 4 CH_esa_130 4 4 0.0000170125

Available child term results

Ontology identifier Description Number of clusters
GO:0048574 long-day photoperiodism, flowering 12
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:2000028 regulation of photoperiodism, flowering 20

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001