Functional clusters

Information

  • Type Gene Ontology
  • Description embryo development ending in seed dormancy

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_4 3 CH_aly_115 13 74 0.000000757369
Arabidopsis thaliana Chr2 3 CH_ath_337 10 75 0.0000223083
Brassica carinata Contig525 3 CH_bca_584 6 12 0.0000810232
Brassica napus C07 3 CH_bna_677 5 9 0.00091536
Brassica rapa A05 3 CH_bra_279 7 25 0.00061721
Corylus avellana 10 3 CH_cav_436 5 8 0.000986057
Citrus clementina scaffold_6 3 CH_ccl_169 9 19 0.000000108897
Cardamine hirsuta Chr4 3 CH_chi_302 11 72 0.00021376
Capsella rubella scaffold_4 3 CH_cru_118 14 71 0.000000103126
Eutrema salsugineum scaffold_10 3 CH_esa_171 12 77 0.000144061
Nicotiana tabacum Nitab4.5_0000105 3 CH_nta_54 5 5 0.00000511068
Rhododendron simsii chr04 3 CH_rsi_252 6 7 0.00000143609
Schrenkiella parvula ch4-6 3 CH_spa_78 13 75 0.00000494743
Arabidopsis lyrata scaffold_4 4 CH_aly_115 13 74 0.000000757369
Arabidopsis thaliana Chr2 4 CH_ath_337 10 75 0.0000223083
Brassica carinata Contig525 4 CH_bca_584 6 12 0.0000810232
Brassica napus C07 4 CH_bna_677 5 9 0.00091536
Brassica rapa A05 4 CH_bra_279 7 25 0.00061721
Corylus avellana 10 4 CH_cav_436 5 8 0.000986057
Citrus clementina scaffold_6 4 CH_ccl_169 9 19 0.000000108897
Cardamine hirsuta Chr4 4 CH_chi_302 11 72 0.00021376
Capsella rubella scaffold_4 4 CH_cru_118 14 71 0.000000103126
Eutrema salsugineum scaffold_10 4 CH_esa_171 12 77 0.000144061
Nicotiana tabacum Nitab4.5_0000105 4 CH_nta_54 5 5 0.00000511068
Rhododendron simsii chr04 4 CH_rsi_252 6 7 0.00000143609
Schrenkiella parvula ch4-6 4 CH_spa_78 13 75 0.00000494743

Available child term results

Ontology identifier Description Number of clusters
GO:0009942 longitudinal axis specification 2
GO:0010071 root meristem specification 6
GO:0010588 cotyledon vascular tissue pattern formation 4
GO:0010654 apical cell fate commitment 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001