Functional clusters

Information

  • Type Gene Ontology
  • Description system development

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cannabis sativa NC_044379.1 3 CH_cansat_183 6 6 0.0000328848
Carpinus fangiana Cfa01 3 CH_cfa_281 14 60 0.000252109
Carya illinoinensis Chr02 3 CH_cil_371 14 45 0.000115096
Durio zibethinus NW_019168270.1 3 CH_dzi_330 6 7 0.000711956
Erigeron canadensis Conyza_canadensis_scaffold:2 3 CH_eca_376 9 26 0.000316194
Cannabis sativa NC_044379.1 4 CH_cansat_183 6 6 0.0000328848
Carpinus fangiana Cfa01 4 CH_cfa_281 14 60 0.000252109
Carya illinoinensis Chr02 4 CH_cil_371 14 45 0.000115096
Durio zibethinus NW_019168270.1 4 CH_dzi_330 6 7 0.000711956
Erigeron canadensis Conyza_canadensis_scaffold:2 4 CH_eca_376 9 26 0.000316194

Available child term results

Ontology identifier Description Number of clusters
GO:0009793 embryo development ending in seed dormancy 26
GO:0009829 cell wall modification involved in fruit ripening 2
GO:0009835 fruit ripening 2
GO:0009901 anther dehiscence 8
GO:0009908 flower development 56
GO:0009909 regulation of flower development 6
GO:0009910 negative regulation of flower development 10
GO:0009942 longitudinal axis specification 2
GO:0009960 endosperm development 16
GO:0010016 shoot system morphogenesis 2
GO:0010052 guard cell differentiation 4
GO:0010054 trichoblast differentiation 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010064 embryonic shoot morphogenesis 4
GO:0010071 root meristem specification 6
GO:0010082 regulation of root meristem growth 2
GO:0010086 embryonic root morphogenesis 12
GO:0010094 specification of carpel identity 6
GO:0010097 specification of stamen identity 6
GO:0010102 lateral root morphogenesis 8
GO:0010150 leaf senescence 18
GO:0010154 fruit development 4
GO:0010223 secondary shoot formation 2
GO:0010227 floral organ abscission 4
GO:0010228 vegetative to reproductive phase transition of meristem 20
GO:0010231 maintenance of seed dormancy 4
GO:0010234 anther wall tapetum cell fate specification 12
GO:0010254 nectary development 2
GO:0010311 lateral root formation 6
GO:0010338 leaf formation 2
GO:0010431 seed maturation 2
GO:0010434 bract formation 6
GO:0010442 guard cell morphogenesis 22
GO:0010448 vegetative meristem growth 2
GO:0010479 stele development 4
GO:0010480 microsporocyte differentiation 4
GO:0010582 floral meristem determinacy 2
GO:0010588 cotyledon vascular tissue pattern formation 4
GO:0010622 specification of ovule identity 2
GO:0010654 apical cell fate commitment 2
GO:0035670 plant-type ovary development 2
GO:0045765 regulation of angiogenesis 6
GO:0048283 indeterminate inflorescence morphogenesis 2
GO:0048317 seed morphogenesis 4
GO:0048354 mucilage biosynthetic process involved in seed coat development 4
GO:0048359 mucilage metabolic process involved in seed coat development 6
GO:0048364 root development 38
GO:0048366 leaf development 12
GO:0048437 floral organ development 2
GO:0048439 flower morphogenesis 2
GO:0048440 carpel development 2
GO:0048444 floral organ morphogenesis 6
GO:0048446 petal morphogenesis 2
GO:0048449 floral organ formation 2
GO:0048451 petal formation 2
GO:0048461 flower structural organization 8
GO:0048462 carpel formation 4
GO:0048481 plant ovule development 2
GO:0048482 plant ovule morphogenesis 2
GO:0048527 lateral root development 6
GO:0048528 post-embryonic root development 2
GO:0048530 fruit morphogenesis 2
GO:0048574 long-day photoperiodism, flowering 12
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:0048653 anther development 6
GO:0048654 anther morphogenesis 18
GO:0048658 anther wall tapetum development 16
GO:0048700 acquisition of desiccation tolerance in seed 32
GO:0048767 root hair elongation 12
GO:0048768 root hair cell tip growth 4
GO:0048829 root cap development 8
GO:0048830 adventitious root development 8
GO:0048831 regulation of shoot system development 6
GO:0048833 specification of floral organ number 32
GO:0048834 specification of petal number 4
GO:0060776 simple leaf morphogenesis 6
GO:0060777 compound leaf morphogenesis 8
GO:0060858 vesicle-mediated transport involved in floral organ abscission 2
GO:0060862 negative regulation of floral organ abscission 4
GO:0062210 shoot regeneration 6
GO:0062211 root regeneration 12
GO:0080001 mucilage extrusion from seed coat 2
GO:0080022 primary root development 2
GO:0080086 stamen filament development 60
GO:0080127 fruit septum development 6
GO:0080147 root hair cell development 4
GO:0080166 stomium development 2
GO:0080181 lateral root branching 6
GO:0080187 floral organ senescence 2
GO:0090057 root radial pattern formation 6
GO:0090506 axillary shoot meristem initiation 6
GO:0090567 reproductive shoot system development 2
GO:0098755 maintenance of seed dormancy by absisic acid 6
GO:0099402 plant organ development 4
GO:1900055 regulation of leaf senescence 8
GO:1901332 negative regulation of lateral root development 18
GO:1901333 positive regulation of lateral root development 4
GO:1901342 regulation of vasculature development 6
GO:1901371 regulation of leaf morphogenesis 2
GO:1902039 negative regulation of seed dormancy process 6
GO:1902892 positive regulation of root hair elongation 2
GO:1905421 regulation of plant organ morphogenesis 2
GO:1990058 fruit replum development 4
GO:1990059 fruit valve development 2
GO:2000024 regulation of leaf development 8
GO:2000025 regulation of leaf formation 2
GO:2000028 regulation of photoperiodism, flowering 20
GO:2000032 regulation of secondary shoot formation 4
GO:2000033 regulation of seed dormancy process 54
GO:2000280 regulation of root development 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001