Functional clusters
Information
- Type Gene Ontology
- Description acquisition of desiccation tolerance in seed
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 3 | CH_acertr_510 | 2 | 2 | 0.00070497 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 3 | CH_arhy_338 | 3 | 4 | 0.000001183 |
| Brassica carinata | ChrB01 | 3 | CH_bca_921 | 2 | 3 | 0.000641272 |
| Cannabis sativa | NC_044378.1 | 3 | CH_cansat_283 | 2 | 2 | 0.000196993 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_77 | 4 | 7 | 0.000000000389088 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_129 | 3 | 4 | 0.0000000832879 |
| Malus domestica | Chr00 | 3 | CH_mdo_653 | 2 | 2 | 0.000568817 |
| Marchantia polymorpha | scaffold_105 | 3 | CH_mpo_41 | 3 | 3 | 0.000000182973 |
| Prunus persica | Pp06 | 3 | CH_ppe_434 | 2 | 2 | 0.000447577 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_286 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NC_039368.1 | 3 | CH_pso_238 | 3 | 3 | 0.0000000639549 |
| Papaver somniferum | NC_039366.1 | 3 | CH_pso_265 | 3 | 4 | 0.000000255804 |
| Quercus lobata | 8 | 3 | CH_qlo_1028 | 2 | 4 | 0.00092924 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_258 | 3 | 3 | 0.0000000476781 |
| Theobroma cacao | Chromosome_10 | 3 | CH_tca_339 | 2 | 2 | 0.000219716 |
| Zea mays | 6 | 3 | CH_zma_288 | 2 | 3 | 0.000460162 |
| Acer truncatum | chr8 | 4 | CH_acertr_510 | 2 | 2 | 0.00070497 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 4 | CH_arhy_338 | 3 | 4 | 0.000001183 |
| Brassica carinata | ChrB01 | 4 | CH_bca_921 | 2 | 3 | 0.000641272 |
| Cannabis sativa | NC_044378.1 | 4 | CH_cansat_283 | 2 | 2 | 0.000196993 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_77 | 4 | 7 | 0.000000000389088 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_129 | 3 | 4 | 0.0000000832879 |
| Malus domestica | Chr00 | 4 | CH_mdo_653 | 2 | 2 | 0.000568817 |
| Marchantia polymorpha | scaffold_105 | 4 | CH_mpo_41 | 3 | 3 | 0.000000182973 |
| Prunus persica | Pp06 | 4 | CH_ppe_434 | 2 | 2 | 0.000447577 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_286 | 2 | 2 | 0.00015649 |
| Papaver somniferum | NC_039368.1 | 4 | CH_pso_238 | 3 | 3 | 0.0000000639549 |
| Papaver somniferum | NC_039366.1 | 4 | CH_pso_265 | 3 | 4 | 0.000000255804 |
| Quercus lobata | 8 | 4 | CH_qlo_1028 | 2 | 4 | 0.00092924 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_258 | 3 | 3 | 0.0000000476781 |
| Theobroma cacao | Chromosome_10 | 4 | CH_tca_339 | 2 | 2 | 0.000219716 |
| Zea mays | 6 | 4 | CH_zma_288 | 2 | 3 | 0.000460162 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |