Functional clusters

Information

  • Type Gene Ontology
  • Description root development

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 3 CH_acertr_50 11 21 0.0000000000175184
Arabidopsis lyrata scaffold_8 3 CH_aly_343 4 4 0.000870669
Brassica napus A07 3 CH_bna_557 4 4 0.000357044
Brassica napus C07 3 CH_bna_558 4 4 0.000357044
Brassica rapa A07 3 CH_bra_268 4 4 0.000493019
Cardamine hirsuta Chr8 3 CH_chi_392 4 4 0.000902303
Carya illinoinensis Chr01 3 CH_cil_43 13 14 6.09752e-19
Fragaria vesca Fvb1 3 CH_fve_324 4 4 0.000331592
Gossypium hirsutum D03 3 CH_ghi_153 8 10 0.000000000799768
Gossypium hirsutum A02 3 CH_ghi_229 6 6 0.000000146384
Glycine max Gm17 3 CH_gma_219 6 7 0.00000228559
Gossypium raimondii Chr03 3 CH_gra_48 10 12 0.000000000000220421
Lonicera japonica GWHAAZE00000007 3 CH_lonja_134 9 11 0.00000000000975981
Olea europaea chr15 3 CH_oeu_109 6 9 0.00000577242
Olea europaea chr18 3 CH_oeu_50 7 9 0.0000000275239
Prunus persica Pp07 3 CH_ppe_476 4 4 0.000783164
Phaseolus vulgaris Chr03 3 CH_pvu_137 6 6 0.000000349387
Quercus lobata 6 3 CH_qlo_213 8 8 0.00000000000592594
Trifolium pratense Tp57577_TGAC_v2_scaf_342 3 CH_tpr_193 5 6 0.0000506513
Acer truncatum chr3 4 CH_acertr_50 11 21 0.0000000000175184
Arabidopsis lyrata scaffold_8 4 CH_aly_343 4 4 0.000870669
Brassica napus A07 4 CH_bna_557 4 4 0.000357044
Brassica napus C07 4 CH_bna_558 4 4 0.000357044
Brassica rapa A07 4 CH_bra_268 4 4 0.000493019
Cardamine hirsuta Chr8 4 CH_chi_392 4 4 0.000902303
Carya illinoinensis Chr01 4 CH_cil_43 13 14 6.09752e-19
Fragaria vesca Fvb1 4 CH_fve_324 4 4 0.000331592
Gossypium hirsutum D03 4 CH_ghi_153 8 10 0.000000000799768
Gossypium hirsutum A02 4 CH_ghi_229 6 6 0.000000146384
Glycine max Gm17 4 CH_gma_219 6 7 0.00000228559
Gossypium raimondii Chr03 4 CH_gra_48 10 12 0.000000000000220421
Lonicera japonica GWHAAZE00000007 4 CH_lonja_134 9 11 0.00000000000975981
Olea europaea chr15 4 CH_oeu_109 6 9 0.00000577242
Olea europaea chr18 4 CH_oeu_50 7 9 0.0000000275239
Prunus persica Pp07 4 CH_ppe_476 4 4 0.000783164
Phaseolus vulgaris Chr03 4 CH_pvu_137 6 6 0.000000349387
Quercus lobata 6 4 CH_qlo_213 8 8 0.00000000000592594
Trifolium pratense Tp57577_TGAC_v2_scaf_342 4 CH_tpr_193 5 6 0.0000506513

Available child term results

Ontology identifier Description Number of clusters
GO:0010054 trichoblast differentiation 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010071 root meristem specification 6
GO:0010082 regulation of root meristem growth 2
GO:0010086 embryonic root morphogenesis 12
GO:0010102 lateral root morphogenesis 8
GO:0010311 lateral root formation 6
GO:0010479 stele development 4
GO:0048527 lateral root development 6
GO:0048528 post-embryonic root development 2
GO:0048767 root hair elongation 12
GO:0048768 root hair cell tip growth 4
GO:0048829 root cap development 8
GO:0048830 adventitious root development 8
GO:0062211 root regeneration 12
GO:0080022 primary root development 2
GO:0080147 root hair cell development 4
GO:0080181 lateral root branching 6
GO:0090057 root radial pattern formation 6
GO:1901332 negative regulation of lateral root development 18
GO:1901333 positive regulation of lateral root development 4
GO:1902892 positive regulation of root hair elongation 2
GO:2000280 regulation of root development 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001