Functional clusters

Information

  • Type Gene Ontology
  • Description catalytic activity, acting on a protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 3 CH_arhy_149 19 26 0.00000000000943185
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 3 CH_arhy_205 20 34 0.000000000886309
Arabidopsis thaliana Chr3 3 CH_ath_539 13 40 0.000342186
Brassica carinata ChrC09 3 CH_bca_485 17 39 0.0000265572
Brassica carinata ChrC04 3 CH_bca_805 13 26 0.000417854
Brassica oleracea C9 3 CH_bol_261 14 33 0.0000588792
Capsicum annuum PGAv.1.6.scaffold411 3 CH_can_253 17 31 0.0000188771
Corylus avellana 11 3 CH_cav_232 22 60 0.0000507124
Citrus clementina scaffold_4 3 CH_ccl_186 14 18 0.000000233873
Cardamine hirsuta Chr8 3 CH_chi_350 11 17 0.00048678
Erigeron canadensis Conyza_canadensis_scaffold:7 3 CH_eca_40 29 76 0.0000000000378973
Eucalyptus grandis Chr07 3 CH_egr_543 30 78 0.00000228891
Fragaria x ananassa Fvb7-2 3 CH_fan_306 10 12 0.0000227297
Fragaria vesca Fvb7 3 CH_fve_151 25 73 0.000000552711
Helianthus annuus HanXRQChr04 3 CH_han_56 22 26 0.00000000000000179006
Malus domestica Chr11 3 CH_mdo_65 29 59 0.000000000000505436
Medicago truncatula chr7 3 CH_mtr_173 28 75 0.000000000307265
Quercus lobata 8 3 CH_qlo_528 14 19 0.00000140767
Rosa chinensis RcHm_v2.0_Chr1 3 CH_rch_477 12 20 0.0000342356
Rhododendron simsii chr13 3 CH_rsi_383 17 40 0.000130142
Salvia bowleyana GWHASIU00000006 3 CH_sbo_361 11 23 0.000135639
Sequoiadendron giganteum chr10 3 CH_sgi_1060 16 39 0.000107692
Sequoiadendron giganteum chr11 3 CH_sgi_1311 19 60 0.000572711
Solanum lycopersicum SL4.0ch02 3 CH_sly_303 25 73 0.0000221332
Selaginella moellendorffii scaffold_1 3 CH_smo_108 15 32 0.0000749151
Solanum pennellii Spenn-ch02 3 CH_spe_51 28 74 0.00000000000401903
Solanum tuberosum ST4.03ch02 3 CH_stu_173 28 78 0.0000000164514
Selenicereus undatus Scaffold_19641 3 CH_sun_86 21 79 0.0000382532
Vitis vinifera chrUn 3 CH_vvi_304 17 41 0.000197627
Zea mays 9 3 CH_zma_340 18 39 0.000780786
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 4 CH_arhy_149 19 26 0.00000000000943185
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 4 CH_arhy_205 20 34 0.000000000886309
Arabidopsis thaliana Chr3 4 CH_ath_539 13 40 0.000342186
Brassica carinata ChrC09 4 CH_bca_485 17 39 0.0000265572
Brassica carinata ChrC04 4 CH_bca_805 13 26 0.000417854
Brassica oleracea C9 4 CH_bol_261 14 33 0.0000588792
Capsicum annuum PGAv.1.6.scaffold411 4 CH_can_253 17 31 0.0000188771
Corylus avellana 11 4 CH_cav_232 22 60 0.0000507124
Citrus clementina scaffold_4 4 CH_ccl_186 14 18 0.000000233873
Cardamine hirsuta Chr8 4 CH_chi_350 11 17 0.00048678
Erigeron canadensis Conyza_canadensis_scaffold:7 4 CH_eca_40 29 76 0.0000000000378973
Eucalyptus grandis Chr07 4 CH_egr_543 30 78 0.00000228891
Fragaria x ananassa Fvb7-2 4 CH_fan_306 10 12 0.0000227297
Fragaria vesca Fvb7 4 CH_fve_151 25 73 0.000000552711
Helianthus annuus HanXRQChr04 4 CH_han_56 22 26 0.00000000000000179006
Malus domestica Chr11 4 CH_mdo_65 29 59 0.000000000000505436
Medicago truncatula chr7 4 CH_mtr_173 28 75 0.000000000307265
Quercus lobata 8 4 CH_qlo_528 14 19 0.00000140767
Rosa chinensis RcHm_v2.0_Chr1 4 CH_rch_477 12 20 0.0000342356
Rhododendron simsii chr13 4 CH_rsi_383 17 40 0.000130142
Salvia bowleyana GWHASIU00000006 4 CH_sbo_361 11 23 0.000135639
Sequoiadendron giganteum chr10 4 CH_sgi_1060 16 39 0.000107692
Sequoiadendron giganteum chr11 4 CH_sgi_1311 19 60 0.000572711
Solanum lycopersicum SL4.0ch02 4 CH_sly_303 25 73 0.0000221332
Selaginella moellendorffii scaffold_1 4 CH_smo_108 15 32 0.0000749151
Solanum pennellii Spenn-ch02 4 CH_spe_51 28 74 0.00000000000401903
Solanum tuberosum ST4.03ch02 4 CH_stu_173 28 78 0.0000000164514
Selenicereus undatus Scaffold_19641 4 CH_sun_86 21 79 0.0000382532
Vitis vinifera chrUn 4 CH_vvi_304 17 41 0.000197627
Zea mays 9 4 CH_zma_340 18 39 0.000780786

Available child term results

Ontology identifier Description Number of clusters
GO:0000155 phosphorelay sensor kinase activity 2
GO:0003755 peptidyl-prolyl cis-trans isomerase activity 28
GO:0003756 protein disulfide isomerase activity 4
GO:0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity 4
GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity 26
GO:0003923 GPI-anchor transamidase activity 14
GO:0004057 arginyltransferase activity 14
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity 2
GO:0004175 endopeptidase activity 18
GO:0004176 ATP-dependent peptidase activity 48
GO:0004177 aminopeptidase activity 10
GO:0004180 carboxypeptidase activity 6
GO:0004181 metallocarboxypeptidase activity 12
GO:0004185 serine-type carboxypeptidase activity 474
GO:0004190 aspartic-type endopeptidase activity 424
GO:0004197 cysteine-type endopeptidase activity 48
GO:0004198 calcium-dependent cysteine-type endopeptidase activity 10
GO:0004222 metalloendopeptidase activity 34
GO:0004252 serine-type endopeptidase activity 472
GO:0004298 threonine-type endopeptidase activity 4
GO:0004402 histone acetyltransferase activity 22
GO:0004407 histone deacetylase activity 20
GO:0004408 holocytochrome-c synthase activity 2
GO:0004660 protein farnesyltransferase activity 2
GO:0004662 CAAX-protein geranylgeranyltransferase activity 6
GO:0004663 Rab geranylgeranyltransferase activity 4
GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity 4
GO:0004672 protein kinase activity 152
GO:0004674 protein serine/threonine kinase activity 102
GO:0004675 transmembrane receptor protein serine/threonine kinase activity 24
GO:0004683 calmodulin-dependent protein kinase activity 2
GO:0004693 cyclin-dependent protein serine/threonine kinase activity 4
GO:0004694 eukaryotic translation initiation factor 2alpha kinase activity 4
GO:0004708 MAP kinase kinase activity 4
GO:0004709 MAP kinase kinase kinase activity 30
GO:0004713 protein tyrosine kinase activity 6
GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity 14
GO:0004722 protein serine/threonine phosphatase activity 16
GO:0004725 protein tyrosine phosphatase activity 6
GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity 2
GO:0004791 thioredoxin-disulfide reductase activity 50
GO:0004839 ubiquitin activating enzyme activity 24
GO:0004842 ubiquitin-protein transferase activity 28
GO:0004843 thiol-dependent deubiquitinase 36
GO:0008138 protein tyrosine/serine/threonine phosphatase activity 18
GO:0008233 peptidase activity 30
GO:0008234 cysteine-type peptidase activity 168
GO:0008235 metalloexopeptidase activity 6
GO:0008236 serine-type peptidase activity 100
GO:0008237 metallopeptidase activity 2
GO:0008238 exopeptidase activity 4
GO:0008239 dipeptidyl-peptidase activity 14
GO:0008240 tripeptidyl-peptidase activity 6
GO:0008242 omega peptidase activity 12
GO:0008318 protein prenyltransferase activity 8
GO:0008349 MAP kinase kinase kinase kinase activity 2
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity 4
GO:0008641 ubiquitin-like modifier activating enzyme activity 12
GO:0009885 transmembrane histidine kinase cytokinin receptor activity 2
GO:0009927 histidine phosphotransfer kinase activity 2
GO:0009931 calcium-dependent protein serine/threonine kinase activity 2
GO:0010296 prenylcysteine methylesterase activity 2
GO:0010484 H3 histone acetyltransferase activity 8
GO:0015035 protein-disulfide reductase activity 6
GO:0016262 protein N-acetylglucosaminyltransferase activity 2
GO:0016274 protein-arginine N-methyltransferase activity 20
GO:0016603 glutaminyl-peptide cyclotransferase activity 6
GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity 10
GO:0016805 dipeptidase activity 24
GO:0016920 pyroglutamyl-peptidase activity 8
GO:0016971 flavin-linked sulfhydryl oxidase activity 18
GO:0018024 histone-lysine N-methyltransferase activity 24
GO:0018025 calmodulin-lysine N-methyltransferase activity 10
GO:0018392 glycoprotein 3-alpha-L-fucosyltransferase activity 2
GO:0019199 transmembrane receptor protein kinase activity 30
GO:0019781 NEDD8 activating enzyme activity 2
GO:0019784 NEDD8-specific protease activity 12
GO:0019787 ubiquitin-like protein transferase activity 6
GO:0019788 NEDD8 transferase activity 2
GO:0019789 SUMO transferase activity 12
GO:0019912 cyclin-dependent protein kinase activating kinase activity 2
GO:0019948 SUMO activating enzyme activity 4
GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) 6
GO:0032454 histone demethylase activity (H3-K9 specific) 68
GO:0033550 MAP kinase tyrosine phosphatase activity 10
GO:0033746 histone demethylase activity (H3-R2 specific) 10
GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity 8
GO:0034450 ubiquitin-ubiquitin ligase activity 16
GO:0034722 gamma-glutamyl-peptidase activity 34
GO:0035173 histone kinase activity 2
GO:0035175 histone kinase activity (H3-S10 specific) 2
GO:0035243 protein-arginine omega-N symmetric methyltransferase activity 2
GO:0035605 peptidyl-cysteine S-nitrosylase activity 2
GO:0036374 glutathione hydrolase activity 44
GO:0042054 histone methyltransferase activity 2
GO:0042800 histone methyltransferase activity (H3-K4 specific) 6
GO:0046922 peptide-O-fucosyltransferase activity 2
GO:0046975 histone methyltransferase activity (H3-K36 specific) 8
GO:0046976 histone methyltransferase activity (H3-K27 specific) 6
GO:0047134 protein-disulfide reductase (NAD(P)) activity 2
GO:0050408 [pyruvate kinase]-phosphatase activity 2
GO:0051722 protein C-terminal methylesterase activity 2
GO:0051723 protein methylesterase activity 8
GO:0061578 Lys63-specific deubiquitinase activity 20
GO:0061630 ubiquitin protein ligase activity 44
GO:0061631 ubiquitin conjugating enzyme activity 2
GO:0061656 SUMO conjugating enzyme activity 2
GO:0061657 UFM1 conjugating enzyme activity 6
GO:0061665 SUMO ligase activity 2
GO:0061666 UFM1 ligase activity 14
GO:0061863 microtubule plus end polymerase 6
GO:0070003 threonine-type peptidase activity 2
GO:0070006 metalloaminopeptidase activity 8
GO:0070008 serine-type exopeptidase activity 2
GO:0070009 serine-type aminopeptidase activity 34
GO:0070122 isopeptidase activity 4
GO:0070139 SUMO-specific endopeptidase activity 2
GO:0071558 histone demethylase activity (H3-K27 specific) 8
GO:0097573 glutathione oxidoreductase activity 294
GO:0101005 deubiquitinase activity 2
GO:0101006 protein histidine phosphatase activity 38
GO:0102953 hypoglycin A gamma-glutamyl transpeptidase activity 2
GO:0106306 protein serine phosphatase activity 2
GO:0106310 protein serine kinase activity 22
GO:1990380 Lys48-specific deubiquitinase activity 20
GO:1990404 protein ADP-ribosylase activity 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001