Functional clusters
Information
- Type Gene Ontology
- Description thiol-dependent deubiquitinase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica oleracea | C7 | 3 | CH_bol_171 | 5 | 19 | 0.00000147574 |
| Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_441 | 4 | 7 | 0.0000136453 |
| Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_484 | 6 | 58 | 0.0000406693 |
| Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_652 | 3 | 3 | 0.000230719 |
| Capsella rubella | scaffold_3 | 3 | CH_cru_240 | 3 | 3 | 0.000113791 |
| Eucalyptus grandis | Chr03 | 3 | CH_egr_712 | 5 | 41 | 0.0000777242 |
| Fragaria x ananassa | Fvb6-4 | 3 | CH_fan_325 | 4 | 9 | 0.0000344635 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_281 | 3 | 4 | 0.000161669 |
| Lupinus albus | Lalb_Chr21 | 3 | CH_lal_318 | 3 | 3 | 0.000267834 |
| Medicago truncatula | chr6 | 3 | CH_mtr_501 | 3 | 3 | 0.0000437966 |
| Oryza sativa ssp. japonica | chr08 | 3 | CH_osa_25 | 8 | 11 | 8.9388e-16 |
| Papaver somniferum | NC_039367.1 | 3 | CH_pso_127 | 7 | 27 | 0.0000000000993062 |
| Papaver somniferum | NC_039367.1 | 3 | CH_pso_354 | 6 | 59 | 0.00000488397 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_1047 | 3 | 3 | 0.0000933922 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_555 | 5 | 10 | 0.0000000368424 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_711 | 5 | 17 | 0.000000898124 |
| Solanum tuberosum | ST4.03ch10 | 3 | CH_stu_612 | 4 | 20 | 0.000759079 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 3 | CH_tpr_341 | 3 | 4 | 0.000454806 |
| Brassica oleracea | C7 | 4 | CH_bol_171 | 5 | 19 | 0.00000147574 |
| Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_441 | 4 | 7 | 0.0000136453 |
| Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_484 | 6 | 58 | 0.0000406693 |
| Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_652 | 3 | 3 | 0.000230719 |
| Capsella rubella | scaffold_3 | 4 | CH_cru_240 | 3 | 3 | 0.000113791 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_712 | 5 | 41 | 0.0000777242 |
| Fragaria x ananassa | Fvb6-4 | 4 | CH_fan_325 | 4 | 9 | 0.0000344635 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_281 | 3 | 4 | 0.000161669 |
| Lupinus albus | Lalb_Chr21 | 4 | CH_lal_318 | 3 | 3 | 0.000267834 |
| Medicago truncatula | chr6 | 4 | CH_mtr_501 | 3 | 3 | 0.0000437966 |
| Oryza sativa ssp. japonica | chr08 | 4 | CH_osa_25 | 8 | 11 | 8.9388e-16 |
| Papaver somniferum | NC_039367.1 | 4 | CH_pso_127 | 7 | 27 | 0.0000000000993062 |
| Papaver somniferum | NC_039367.1 | 4 | CH_pso_354 | 6 | 59 | 0.00000488397 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_1047 | 3 | 3 | 0.0000933922 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_555 | 5 | 10 | 0.0000000368424 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_711 | 5 | 17 | 0.000000898124 |
| Solanum tuberosum | ST4.03ch10 | 4 | CH_stu_612 | 4 | 20 | 0.000759079 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 4 | CH_tpr_341 | 3 | 4 | 0.000454806 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |