Functional clusters
Information
- Type Gene Ontology
- Description ubiquitin-protein transferase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Chlamydomonas reinhardtii | chromosome_17 | 3 | CH_cre_25 | 5 | 5 | 0.000000345512 |
| Daucus carota | DCARv2_Chr9 | 3 | CH_dca_211 | 5 | 6 | 0.0000248101 |
| Daucus carota | DCARv2_Chr3 | 3 | CH_dca_259 | 5 | 7 | 0.0000860734 |
| Lonicera japonica | GWHAAZE00000005 | 3 | CH_lonja_428 | 7 | 28 | 0.000158472 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 3 | CH_lsa_81 | 9 | 13 | 0.0000000000121023 |
| Manihot esculenta | Chromosome10 | 3 | CH_mes_71 | 13 | 29 | 0.000000000000125209 |
| Oryza sativa ssp. japonica | chr02 | 3 | CH_osa_161 | 7 | 12 | 0.00000047411 |
| Oryza sativa ssp. japonica | chr04 | 3 | CH_osa_427 | 4 | 4 | 0.000512755 |
| Quercus lobata | 5 | 3 | CH_qlo_523 | 5 | 5 | 0.00000123097 |
| Quercus lobata | 5 | 3 | CH_qlo_804 | 5 | 9 | 0.000151057 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_1021 | 4 | 4 | 0.0000578187 |
| Solanum lycopersicum | SL4.0ch12 | 3 | CH_sly_593 | 4 | 4 | 0.000960391 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_120 | 8 | 19 | 0.000000321556 |
| Zea mays | 9 | 3 | CH_zma_63 | 9 | 13 | 0.00000000316548 |
| Chlamydomonas reinhardtii | chromosome_17 | 4 | CH_cre_25 | 5 | 5 | 0.000000345512 |
| Daucus carota | DCARv2_Chr9 | 4 | CH_dca_211 | 5 | 6 | 0.0000248101 |
| Daucus carota | DCARv2_Chr3 | 4 | CH_dca_259 | 5 | 7 | 0.0000860734 |
| Lonicera japonica | GWHAAZE00000005 | 4 | CH_lonja_428 | 7 | 28 | 0.000158472 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 4 | CH_lsa_81 | 9 | 13 | 0.0000000000121023 |
| Manihot esculenta | Chromosome10 | 4 | CH_mes_71 | 13 | 29 | 0.000000000000125209 |
| Oryza sativa ssp. japonica | chr02 | 4 | CH_osa_161 | 7 | 12 | 0.00000047411 |
| Oryza sativa ssp. japonica | chr04 | 4 | CH_osa_427 | 4 | 4 | 0.000512755 |
| Quercus lobata | 5 | 4 | CH_qlo_523 | 5 | 5 | 0.00000123097 |
| Quercus lobata | 5 | 4 | CH_qlo_804 | 5 | 9 | 0.000151057 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_1021 | 4 | 4 | 0.0000578187 |
| Solanum lycopersicum | SL4.0ch12 | 4 | CH_sly_593 | 4 | 4 | 0.000960391 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_120 | 8 | 19 | 0.000000321556 |
| Zea mays | 9 | 4 | CH_zma_63 | 9 | 13 | 0.00000000316548 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0034450 | ubiquitin-ubiquitin ligase activity | 16 |
| GO:0061630 | ubiquitin protein ligase activity | 44 |
| GO:0061631 | ubiquitin conjugating enzyme activity | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |