Functional clusters
Information
- Type Gene Ontology
- Description histone demethylase activity (H3-K9 specific)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 3 | CH_aar_46 | 4 | 4 | 0.000000000478464 |
| Actinidia chinensis | Lachesis_group3 | 3 | CH_ach_72 | 3 | 3 | 0.00000161118 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 3 | CH_amhyb_71 | 3 | 3 | 0.0000023383 |
| Amborella trichopoda | AmTr_v1.0_scaffold00029 | 3 | CH_atr_268 | 3 | 15 | 0.000360867 |
| Brassica carinata | ChrC05 | 3 | CH_bca_266 | 4 | 10 | 0.000000251433 |
| Brassica carinata | ChrB01 | 3 | CH_bca_314 | 5 | 53 | 0.00000105343 |
| Brassica rapa | A03 | 3 | CH_bra_99 | 3 | 3 | 0.00000100635 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 3 | CH_bvu_111 | 3 | 3 | 0.00000123386 |
| Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_25 | 8 | 11 | 1.67413e-21 |
| Cicer arietinum L. | Ca_LG4_v3 | 3 | CH_car_75 | 3 | 5 | 0.0000199785 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4365 | 3 | CH_cqu_129 | 4 | 6 | 0.000000018544 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 3 | CH_eca_103 | 4 | 7 | 0.0000000367413 |
| Erythranthe guttata | scaffold_8 | 3 | CH_egut_27 | 8 | 10 | 1.21259e-18 |
| Erythranthe guttata | scaffold_2 | 3 | CH_egut_41 | 8 | 18 | 0.00000000000000117178 |
| Fragaria x ananassa | Fvb7-1 | 3 | CH_fan_274 | 3 | 3 | 0.0000094622 |
| Fragaria x ananassa | Fvb7-1 | 3 | CH_fan_420 | 3 | 6 | 0.000189058 |
| Glycine max | Gm08 | 3 | CH_gma_344 | 3 | 6 | 0.000141429 |
| Hydrangea macrophylla | Hma1.2p1_1374F.1 | 3 | CH_hma_56 | 3 | 3 | 0.0000000740453 |
| Lonicera japonica | GWHAAZE00000004 | 3 | CH_lonja_46 | 8 | 10 | 1.71374e-21 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 3 | CH_lsa_4 | 13 | 18 | 1.6584e-34 |
| Medicago truncatula | chr1 | 3 | CH_mtr_464 | 3 | 5 | 0.0000336579 |
| Medicago truncatula | chr2 | 3 | CH_mtr_465 | 3 | 5 | 0.0000336579 |
| Petunia axillaris | Peaxi162Scf00090 | 3 | CH_pax_59 | 4 | 9 | 0.0000000276192 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_256 | 3 | 11 | 0.000110961 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_153 | 5 | 9 | 0.000000000036969 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_200 | 5 | 18 | 0.00000000250781 |
| Simmondsia chinensis | GWHAASQ00000015 | 3 | CH_sci_89 | 3 | 3 | 0.00000179427 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_382 | 4 | 4 | 0.000000000114461 |
| Sapria himalayana | scaffold74_2176963 | 3 | CH_shi_61 | 4 | 10 | 0.0000000841037 |
| Solanum lycopersicum | SL4.0ch08 | 3 | CH_sly_213 | 3 | 3 | 0.000000852661 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 3 | CH_tpr_152 | 5 | 44 | 0.00000879069 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 3 | CH_tpr_62 | 4 | 4 | 0.000000011524 |
| Tripterygium wilfordii | NC_052252.1 | 3 | CH_twi_179 | 3 | 6 | 0.0000205284 |
| Vaccinium macrocarpon | scaffold00220_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_149 | 3 | 3 | 0.00000213722 |
| Aethionema arabicum | LG-2 | 4 | CH_aar_46 | 4 | 4 | 0.000000000478464 |
| Actinidia chinensis | Lachesis_group3 | 4 | CH_ach_72 | 3 | 3 | 0.00000161118 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 4 | CH_amhyb_71 | 3 | 3 | 0.0000023383 |
| Amborella trichopoda | AmTr_v1.0_scaffold00029 | 4 | CH_atr_268 | 3 | 15 | 0.000360867 |
| Brassica carinata | ChrC05 | 4 | CH_bca_266 | 4 | 10 | 0.000000251433 |
| Brassica carinata | ChrB01 | 4 | CH_bca_314 | 5 | 53 | 0.00000105343 |
| Brassica rapa | A03 | 4 | CH_bra_99 | 3 | 3 | 0.00000100635 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 4 | CH_bvu_111 | 3 | 3 | 0.00000123386 |
| Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_25 | 8 | 11 | 1.67413e-21 |
| Cicer arietinum L. | Ca_LG4_v3 | 4 | CH_car_75 | 3 | 5 | 0.0000199785 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4365 | 4 | CH_cqu_129 | 4 | 6 | 0.000000018544 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 4 | CH_eca_103 | 4 | 7 | 0.0000000367413 |
| Erythranthe guttata | scaffold_8 | 4 | CH_egut_27 | 8 | 10 | 1.21259e-18 |
| Erythranthe guttata | scaffold_2 | 4 | CH_egut_41 | 8 | 18 | 0.00000000000000117178 |
| Fragaria x ananassa | Fvb7-1 | 4 | CH_fan_274 | 3 | 3 | 0.0000094622 |
| Fragaria x ananassa | Fvb7-1 | 4 | CH_fan_420 | 3 | 6 | 0.000189058 |
| Glycine max | Gm08 | 4 | CH_gma_344 | 3 | 6 | 0.000141429 |
| Hydrangea macrophylla | Hma1.2p1_1374F.1 | 4 | CH_hma_56 | 3 | 3 | 0.0000000740453 |
| Lonicera japonica | GWHAAZE00000004 | 4 | CH_lonja_46 | 8 | 10 | 1.71374e-21 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 4 | CH_lsa_4 | 13 | 18 | 1.6584e-34 |
| Medicago truncatula | chr1 | 4 | CH_mtr_464 | 3 | 5 | 0.0000336579 |
| Medicago truncatula | chr2 | 4 | CH_mtr_465 | 3 | 5 | 0.0000336579 |
| Petunia axillaris | Peaxi162Scf00090 | 4 | CH_pax_59 | 4 | 9 | 0.0000000276192 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_256 | 3 | 11 | 0.000110961 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_153 | 5 | 9 | 0.000000000036969 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_200 | 5 | 18 | 0.00000000250781 |
| Simmondsia chinensis | GWHAASQ00000015 | 4 | CH_sci_89 | 3 | 3 | 0.00000179427 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_382 | 4 | 4 | 0.000000000114461 |
| Sapria himalayana | scaffold74_2176963 | 4 | CH_shi_61 | 4 | 10 | 0.0000000841037 |
| Solanum lycopersicum | SL4.0ch08 | 4 | CH_sly_213 | 3 | 3 | 0.000000852661 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 4 | CH_tpr_152 | 5 | 44 | 0.00000879069 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 4 | CH_tpr_62 | 4 | 4 | 0.000000011524 |
| Tripterygium wilfordii | NC_052252.1 | 4 | CH_twi_179 | 3 | 6 | 0.0000205284 |
| Vaccinium macrocarpon | scaffold00220_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_149 | 3 | 3 | 0.00000213722 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |