Functional clusters
Information
- Type Gene Ontology
- Description ubiquitin protein ligase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR04 | 3 | CH_aox_294 | 3 | 3 | 0.000733995 |
| Camellia sinensis var. sinensis | Chr13 | 3 | CH_camsi_842 | 3 | 3 | 0.000908305 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2608 | 3 | CH_cqu_53 | 7 | 7 | 0.000000000000117006 |
| Daucus carota | DCARv2_Chr9 | 3 | CH_dca_266 | 4 | 7 | 0.000110392 |
| Davidia involucrata | GWHABJS00000005 | 3 | CH_din_422 | 3 | 3 | 0.000878471 |
| Erythranthe guttata | scaffold_2 | 3 | CH_egut_419 | 3 | 3 | 0.000872758 |
| Hydrangea macrophylla | Hma1.2p1_0375F.1 | 3 | CH_hma_94 | 4 | 4 | 0.00000214648 |
| Lotus japonicus | chr1 | 3 | CH_lja_180 | 4 | 5 | 0.0000146233 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 3 | CH_lsa_358 | 4 | 7 | 0.000132782 |
| Magnolia biondii | Chr19 | 3 | CH_mbi_128 | 6 | 10 | 0.00000000141967 |
| Micromonas commoda | Chr_06 | 3 | CH_mco_35 | 3 | 4 | 0.00076886 |
| Malus domestica | Chr15 | 3 | CH_mdo_728 | 3 | 3 | 0.000924379 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_12 | 8 | 8 | 5.21227e-17 |
| Quercus lobata | 11 | 3 | CH_qlo_798 | 5 | 22 | 0.000137011 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_671 | 4 | 13 | 0.000358656 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_778 | 4 | 5 | 0.00000334096 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_407 | 3 | 3 | 0.000410766 |
| Selenicereus undatus | Scaffold_33676 | 3 | CH_sun_244 | 3 | 4 | 0.000829953 |
| Trochodendron aralioides | group13 | 3 | CH_tar_372 | 4 | 7 | 0.000263792 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 3 | CH_tpr_344 | 3 | 3 | 0.000580409 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 3 | CH_tpr_345 | 3 | 3 | 0.000580409 |
| Zea mays | 5 | 3 | CH_zma_144 | 5 | 5 | 0.00000321083 |
| Aquilegia oxysepala | CHR04 | 4 | CH_aox_294 | 3 | 3 | 0.000733995 |
| Camellia sinensis var. sinensis | Chr13 | 4 | CH_camsi_842 | 3 | 3 | 0.000908305 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2608 | 4 | CH_cqu_53 | 7 | 7 | 0.000000000000117006 |
| Daucus carota | DCARv2_Chr9 | 4 | CH_dca_266 | 4 | 7 | 0.000110392 |
| Davidia involucrata | GWHABJS00000005 | 4 | CH_din_422 | 3 | 3 | 0.000878471 |
| Erythranthe guttata | scaffold_2 | 4 | CH_egut_419 | 3 | 3 | 0.000872758 |
| Hydrangea macrophylla | Hma1.2p1_0375F.1 | 4 | CH_hma_94 | 4 | 4 | 0.00000214648 |
| Lotus japonicus | chr1 | 4 | CH_lja_180 | 4 | 5 | 0.0000146233 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 4 | CH_lsa_358 | 4 | 7 | 0.000132782 |
| Magnolia biondii | Chr19 | 4 | CH_mbi_128 | 6 | 10 | 0.00000000141967 |
| Micromonas commoda | Chr_06 | 4 | CH_mco_35 | 3 | 4 | 0.00076886 |
| Malus domestica | Chr15 | 4 | CH_mdo_728 | 3 | 3 | 0.000924379 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_12 | 8 | 8 | 5.21227e-17 |
| Quercus lobata | 11 | 4 | CH_qlo_798 | 5 | 22 | 0.000137011 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_671 | 4 | 13 | 0.000358656 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_778 | 4 | 5 | 0.00000334096 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_407 | 3 | 3 | 0.000410766 |
| Selenicereus undatus | Scaffold_33676 | 4 | CH_sun_244 | 3 | 4 | 0.000829953 |
| Trochodendron aralioides | group13 | 4 | CH_tar_372 | 4 | 7 | 0.000263792 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 4 | CH_tpr_344 | 3 | 3 | 0.000580409 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 4 | CH_tpr_345 | 3 | 3 | 0.000580409 |
| Zea mays | 5 | 4 | CH_zma_144 | 5 | 5 | 0.00000321083 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0034450 | ubiquitin-ubiquitin ligase activity | 16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |