Functional clusters

Information

  • Type Gene Ontology
  • Description cell communication

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Erigeron canadensis Conyza_canadensis_scaffold:9 3 CH_eca_282 15 71 0.0000931254
Erigeron canadensis Conyza_canadensis_scaffold:9 4 CH_eca_282 15 71 0.0000931254

Available child term results

Ontology identifier Description Number of clusters
GO:0000160 phosphorelay signal transduction system 24
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002221 pattern recognition receptor signaling pathway 6
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0006983 ER overload response 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0006995 cellular response to nitrogen starvation 18
GO:0007094 mitotic spindle assembly checkpoint signaling 8
GO:0007095 mitotic G2 DNA damage checkpoint signaling 8
GO:0007165 signal transduction 16
GO:0007166 cell surface receptor signaling pathway 18
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway 12
GO:0007186 G protein-coupled receptor signaling pathway 20
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway 10
GO:0007219 Notch signaling pathway 4
GO:0007264 small GTPase mediated signal transduction 10
GO:0009267 cellular response to starvation 4
GO:0009585 red, far-red light phototransduction 4
GO:0009734 auxin-activated signaling pathway 74
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009785 blue light signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009859 pollen hydration 12
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009875 pollen-pistil interaction 6
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0009966 regulation of signal transduction 8
GO:0009970 cellular response to sulfate starvation 4
GO:0010018 far-red light signaling pathway 6
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010106 cellular response to iron ion starvation 4
GO:0010315 auxin efflux 16
GO:0010438 cellular response to sulfur starvation 12
GO:0010646 regulation of cell communication 4
GO:0016036 cellular response to phosphate starvation 4
GO:0019722 calcium-mediated signaling 6
GO:0030845 phospholipase C-inhibiting G protein-coupled receptor signaling pathway 84
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031567 mitotic cell size control checkpoint signaling 6
GO:0031570 DNA integrity checkpoint signaling 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0031669 cellular response to nutrient levels 2
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 10
GO:0033314 mitotic DNA replication checkpoint signaling 16
GO:0033316 meiotic spindle assembly checkpoint signaling 2
GO:0034224 cellular response to zinc ion starvation 8
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0035556 intracellular signal transduction 22
GO:0035874 cellular response to copper ion starvation 6
GO:0042149 cellular response to glucose starvation 2
GO:0042631 cellular response to water deprivation 14
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043562 cellular response to nitrogen levels 2
GO:0043617 cellular response to sucrose starvation 2
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045168 cell-cell signaling involved in cell fate commitment 16
GO:0048015 phosphatidylinositol-mediated signaling 14
GO:0048016 inositol phosphate-mediated signaling 2
GO:0048544 recognition of pollen 748
GO:0048629 trichome patterning 8
GO:0051365 cellular response to potassium ion starvation 6
GO:0060320 rejection of self pollen 48
GO:0060321 acceptance of pollen 2
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0062207 regulation of pattern recognition receptor signaling pathway 2
GO:0071588 hydrogen peroxide mediated signaling pathway 6
GO:0072732 cellular response to calcium ion starvation 74
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0080169 cellular response to boron-containing substance deprivation 2
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:0106167 extracellular ATP signaling 2
GO:0140301 pollen-stigma interaction 6
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900032 regulation of trichome patterning 4
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement 16
GO:1902531 regulation of intracellular signal transduction 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1904263 positive regulation of TORC1 signaling 4
GO:1990109 rejection of pollen from other species 38
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001