Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
PAB00059840	Picea abies	HOM04x5M004483	ORTHO04x5M005884	8.9e-55	215.7	139	100.0
ATR1098G037	Amborella trichopoda	HOM04x5M004483	ORTHO04x5M005884	2.4e-36	154.5	140	63.6
Solyc04g049490.2	Solanum lycopersicum	HOM04x5M004483	ORTHO04x5M005884	9.3e-36	152.5	137	61.3
OB01G49770	Oryza brachyantha	HOM04x5M004483	ORTHO04x5M005884	2.1e-35	151.4	146	59.6
Oropetium_20150105_13133	Oropetium thomaeum	HOM04x5M004483	ORTHO04x5M005884	4.6e-35	150.2	144	59.0
Bradi2g58070	Brachypodium distachyon	HOM04x5M004483	ORTHO04x5M005884	6.0e-35	149.8	146	63.0
Potri.016G023000	Populus trichocarpa	HOM04x5M004483	ORTHO04x5M005884	7.8e-35	149.4	139	61.9
Aco018477	Ananas comosus	HOM04x5M004483	ORTHO04x5M005884	1.3e-34	148.7	152	71.1
LOC_Os01g67880	Oryza sativa ssp. japonica	HOM04x5M004483	ORTHO04x5M005884	3.9e-34	147.1	147	69.4
OsR498G0102540800.01	Oryza sativa ssp. indica	HOM04x5M004483	ORTHO04x5M005884	3.9e-34	147.1	147	69.4
Pgl_GLEAN_10010470	Cenchrus americanus	HOM04x5M004483	ORTHO04x5M005884	5.1e-34	146.7	151	66.2
LP034954	Lolium perenne	HOM04x5M004483	ORTHO04x5M005884	1.1e-33	145.6	149	57.7
PH01000031G1260	Phyllostachys edulis	HOM04x5M004483	ORTHO04x5M005884	1.1e-33	145.6	146	65.8
Sspon.03G0045090-1D	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	1.1e-33	145.6	149	71.1
Sspon.03G0000770-4D	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	1.1e-33	145.6	149	71.1
p5.00_sc00079_p0034	Elaeis guineensis	HOM04x5M004483	ORTHO04x5M005884	1.5e-33	145.2	148	71.6
Zosma30g00970	Zostera marina	HOM04x5M004483	ORTHO04x5M005884	1.5e-33	145.2	143	69.9
Seita.5G420100	Setaria italica	HOM04x5M004483	ORTHO04x5M005884	1.9e-33	144.8	151	71.5
TRITD3Bv1G217030	Triticum turgidum	HOM04x5M004483	ORTHO04x5M005884	1.9e-33	144.8	146	66.4
ASH_gene16649	Apostasia shenzhenica	HOM04x5M004483	ORTHO04x5M005884	2.5e-33	144.4	151	65.6
PEQU_14398	Phalaenopsis equestris	HOM04x5M004483	ORTHO04x5M005884	2.5e-33	144.4	154	69.5
Sobic.003G394200	Sorghum bicolor	HOM04x5M004483	ORTHO04x5M005884	2.5e-33	144.4	151	69.5
Sspon.03G0000770-3C	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	2.5e-33	144.4	151	70.2
Sspon.03G0000770-2B	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	2.5e-33	144.4	151	69.5
AT1G50500	Arabidopsis thaliana	HOM04x5M004483	ORTHO04x5M005884	3.3e-33	144.1	139	56.1
Zm00008a013008	Zea mays PH207	HOM04x5M004483	ORTHO04x5M005884	3.3e-33	144.1	151	69.5
HORVU3Hr1G088490	Hordeum vulgare	HOM04x5M004483	ORTHO04x5M005884	4.3e-33	143.7	151	67.5
HORVU3Hr1G088450	Hordeum vulgare	HOM04x5M004483	ORTHO04x5M005884	4.3e-33	143.7	151	67.5
TraesCS3B02G422700	Triticum aestivum	HOM04x5M004483	ORTHO04x5M005884	7.3e-33	142.9	151	62.9
TraesCS3D02G383500	Triticum aestivum	HOM04x5M004483	ORTHO04x5M005884	7.3e-33	142.9	151	66.2
TraesCS3A02G390900	Triticum aestivum	HOM04x5M004483	ORTHO04x5M005884	7.3e-33	142.9	151	62.9
TRITD3Av1G230670	Triticum turgidum	HOM04x5M004483	ORTHO04x5M005884	7.3e-33	142.9	151	62.9
Zm00001d042451	Zea mays B73	HOM04x5M004483	ORTHO04x5M005884	9.6e-33	142.5	151	69.5
Zm00007a00032775	Zea mays B104	HOM04x5M004483	ORTHO04x5M005884	9.6e-33	142.5	151	69.5
Sspon.03G0000770-1A	Saccharum spontaneum	HOM04x5M004483	ORTHO04x5M005884	1.3e-32	142.1	151	68.9
CALSI_Maker00040564	Calamus simplicifolius	HOM04x5M004483	ORTHO04x5M005884	1.6e-32	141.7	148	73.0
Misin06G412700	Miscanthus sinensis	HOM04x5M004483	ORTHO04x5M005884	1.6e-32	141.7	148	68.9
Misin06G362600	Miscanthus sinensis	HOM04x5M004483	ORTHO04x5M005884	2.8e-32	141.0	151	69.5
Ma09_g26670	Musa acuminata	HOM04x5M004483	ORTHO04x5M005884	1.1e-31	139.0	147	71.4
evm.TU.AsparagusV1_07.3477.V1.1	Asparagus officinalis	HOM04x5M004483	ORTHO04x5M005884	1.4e-31	138.7	148	71.6
Ma06_g32990	Musa acuminata	HOM04x5M004483	ORTHO04x5M005884	2.9e-29	131.0	144	72.2
GSVIVG01016094001	Vitis vinifera	HOM04x5M004483	ORTHO04x5M005884	2.1e-24	114.8	140	66.4
Spipo16G0007900	Spirodela polyrhiza	HOM04x5M004483	ORTHO04x5M005884	9.0e-23	109.4	137	48.2
Mapoly0030s0152	Marchantia polymorpha	HOM04x5M004483	ORTHO04x5M005884	1.7e-21	105.1	153	44.4
Zjn_sc00009.1.g03380.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004483	ORTHO04x5M005884	5.1e-18	93.6	111	57.7
AT1G50970	Arabidopsis thaliana	HOM04x5M004483	ORTHO04x5M005884	6.7e-18	93.2	135	45.2
Zjn_sc00034.1.g03870.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004483	ORTHO04x5M005884	6.7e-18	93.2	115	63.5
gene23001	Selaginella moellendorffii	HOM04x5M004483	ORTHO04x5M005884	4.8e-16	87.0	143	48.3
gene24646	Selaginella moellendorffii	HOM04x5M004483	ORTHO04x5M005884	4.8e-16	87.0	143	48.3
Pp3c24_4920	Physcomitrium patens	HOM04x5M004483	ORTHO04x5M005884	2.2e-13	78.2	142	34.5
Pp3c8_8190	Physcomitrium patens	HOM04x5M004483	ORTHO04x5M005884	1.4e-12	75.5	142	35.9

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
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