Oryza sativa ssp. japonica

The rice genome was sequenced because of it's major importance in the world food industry and it's relatively small genome size. Since the first sequenced plant genome (Arabidopsis thalia) was a dicotylous plant it made sense to sequence a monocot next to have a broad taxonomix sampling. Unlike many of the recently sequenced genomes the sequencing has been done using a BAC-by-BAC approach a very costly a labour intensive procedure. But this yields a very high quality genome that can be assembled into chromosomes.
Publication:
The map-based sequence of the rice genome.
Info and Links
Source | JGI v7.0 |
PLAZA identifier | osa |
NCBI link | Oryza sativa ssp. japonica |
Mitochondrion | Not available |
Chloroplast | Not available |
Toolbox



Annotations
Page 1 of 2110, showing 20 records out of 42189 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Homologous gene family | Orthologous gene family |
---|---|---|---|---|---|---|---|---|
LOC_Os01g51770 | LOC_Os01g51770.1 | 29770481 | 29773245 | - | Chr1 | coding | HOM04x5M000536 | ORTHO04x5M000497 |
LOC_Os01g19860 | LOC_Os01g19860.1 | 11264170 | 11266136 | - | Chr1 | coding | HOM04x5M002332 | ORTHO04x5M002843 |
LOC_Os01g25470 | LOC_Os01g25470.1 | 14442717 | 14444896 | - | Chr1 | coding | HOM04x5M000216 | ORTHO04x5M000140 |
LOC_Os01g04760 | LOC_Os01g04760.1 | 2162723 | 2162971 | - | Chr1 | coding | Orphan Gene | Orphan Gene |
LOC_Os01g04660 | LOC_Os01g04660.1 | 2097677 | 2100391 | + | Chr1 | coding | HOM04x5M000803 | ORTHO04x5M000625 |
LOC_Os01g45710 | LOC_Os01g45710.1 | 25952641 | 25954080 | + | Chr1 | coding | Orphan Gene | Orphan Gene |
LOC_Os01g39150 | LOC_Os01g39150.1 | 22036830 | 22037585 | + | Chr1 | coding | HOM04x5M000095 | ORTHO04x5M000088 |
LOC_Os01g27150 | LOC_Os01g27150.2 | 15131500 | 15139267 | - | Chr1 | coding | HOM04x5M000423 | ORTHO04x5M001504 |
LOC_Os01g29260 | LOC_Os01g29260.1 | 16400629 | 16403593 | + | Chr1 | coding | HOM04x5M000960 | ORTHO04x5M000697 |
LOC_Os01g31820 | LOC_Os01g31820.1 | 17432862 | 17433638 | + | Chr1 | coding | Orphan Gene | Orphan Gene |
LOC_Os01g56290 | LOC_Os01g56290.1 | 32424633 | 32426449 | + | Chr1 | coding | HOM04x5M005974 | ORTHO04x5M007317 |
LOC_Os01g72210 | LOC_Os01g72210.2 | 41870471 | 41873654 | + | Chr1 | coding | HOM04x5M000337 | ORTHO04x5M000227 |
LOC_Os01g53560 | LOC_Os01g53560.1 | 30753509 | 30760952 | + | Chr1 | coding | HOM04x5M005541 | ORTHO04x5M006215 |
LOC_Os01g12680 | LOC_Os01g12680.4 | 6991354 | 6993431 | + | Chr1 | coding | HOM04x5M000498 | ORTHO04x5M000485 |
LOC_Os01g70000 | LOC_Os01g70000.1 | 40494054 | 40495520 | + | Chr1 | coding | HOM04x5M022318 | ORTHO04x5M021607 |
LOC_Os01g50320 | LOC_Os01g50320.1 | 28885554 | 28890711 | + | Chr1 | coding | HOM04x5M005126 | ORTHO04x5M006045 |
LOC_Os01g52760 | LOC_Os01g52760.1 | 30351829 | 30353432 | + | Chr1 | coding | HOM04x5M007156 | ORTHO04x5M008949 |
LOC_Os01g61720 | LOC_Os01g61720.3 | 35709860 | 35712378 | - | Chr1 | coding | HOM04x5M000356 | ORTHO04x5M001432 |
LOC_Os01g57066 | LOC_Os01g57066.1 | 32957317 | 32962793 | + | Chr1 | coding | HOM04x5M002140 | ORTHO04x5M002238 |
LOC_Os01g55470 | LOC_Os01g55470.1 | 31957499 | 31961019 | - | Chr1 | coding | HOM04x5M000190 | ORTHO04x5M000891 |