Oryza sativa ssp. indica

Oryza sativa indica is a subspecies of the Oryza sativa (commonly known as rice) species. Rice is a major food staple of the world's population, and after the sequencing of the monot model species Oryza sativa japonica, BGI sequenced the indica variety. Both subspecies are of course highly similar in genomic content.
Publication:
A draft sequence of the rice genome (Oryza sativa L. ssp. indica).
Info and Links
Source | MBKBASE v1.0 |
PLAZA identifier | osaindica |
NCBI link | Oryza sativa ssp. indica |
Mitochondrion | Not available |
Chloroplast | Not available |
Toolbox



Annotations
Page 1 of 1936, showing 20 records out of 38714 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Homologous gene family | Orthologous gene family |
---|---|---|---|---|---|---|---|---|
OsR498G0102028800.01 | OsR498G0102028800.01.T01 | 32924357 | 32929696 | - | Chr1 | coding | HOM04x5M000728 | ORTHO04x5M001036 |
OsR498G0100223800.01 | OsR498G0100223800.01.T01 | 3432716 | 3440156 | - | Chr1 | coding | HOM04x5M008152 | ORTHO04x5M009918 |
OsR498G0102662400.01 | OsR498G0102662400.01.T01 | 42254976 | 42256214 | - | Chr1 | coding | HOM04x5M000581 | ORTHO04x5M000534 |
OsR498G0102157700.01 | OsR498G0102157700.01.T01 | 34972343 | 34973120 | + | Chr1 | coding | HOM04x5M001025 | ORTHO04x5M001180 |
OsR498G0102572000.01 | OsR498G0102572000.01.T01 | 40952935 | 40959109 | - | Chr1 | coding | HOM04x5M000870 | ORTHO04x5M007181 |
OsR498G0102686500.01 | OsR498G0102686500.01.T01 | 42689157 | 42689360 | + | Chr1 | coding | Orphan Gene | Orphan Gene |
OsR498G0100208000.01 | OsR498G0100208000.01.T01 | 3096612 | 3096896 | - | Chr1 | coding | HOM04x5M000347 | ORTHO04x5M000113 |
OsR498G0101165600.01 | OsR498G0101165600.01.T02 | 19919966 | 19922290 | - | Chr1 | coding | HOM04x5M000408 | ORTHO04x5M000099 |
OsR498G0102556000.01 | OsR498G0102556000.01.T01 | 40682606 | 40687181 | - | Chr1 | coding | HOM04x5M000063 | ORTHO04x5M008322 |
OsR498G0100082800.01 | OsR498G0100082800.01.T01 | 1278329 | 1278886 | - | Chr1 | coding | HOM04x5M001861 | ORTHO04x5M001964 |
OsR498G0100090500.01 | OsR498G0100090500.01.T01 | 1417223 | 1417579 | + | Chr1 | coding | HOM04x5M000408 | ORTHO04x5M000099 |
OsR498G0100668900.01 | OsR498G0100668900.01.T01 | 10035567 | 10036797 | + | Chr1 | coding | HOM04x5M000108 | ORTHO04x5M000342 |
OsR498G0101951700.01 | OsR498G0101951700.01.T01 | 31719981 | 31720358 | + | Chr1 | coding | HOM04x5M000055 | ORTHO04x5M000042 |
OsR498G0102236900.01 | OsR498G0102236900.01.T01 | 36192853 | 36194764 | + | Chr1 | coding | HOM04x5M005731 | ORTHO04x5M006765 |
OsR498G0101413800.01 | OsR498G0101413800.01.T01 | 23570133 | 23570591 | - | Chr1 | coding | Orphan Gene | Orphan Gene |
OsR498G0101788700.01 | OsR498G0101788700.01.T01 | 29335978 | 29336508 | + | Chr1 | coding | Orphan Gene | Orphan Gene |
OsR498G0101882900.01 | OsR498G0101882900.01.T01 | 30704122 | 30710152 | + | Chr1 | coding | HOM04x5M008130 | ORTHO04x5M010595 |
OsR498G0100208600.01 | OsR498G0100208600.01.T01 | 3105204 | 3110184 | - | Chr1 | coding | HOM04x5M001921 | ORTHO04x5M007225 |
OsR498G0102329500.01 | OsR498G0102329500.01.T01 | 37446526 | 37449577 | + | Chr1 | coding | HOM04x5M000203 | ORTHO04x5M000609 |
OsR498G0100590400.01 | OsR498G0100590400.01.T01 | 8823021 | 8823356 | - | Chr1 | coding | Orphan Gene | Orphan Gene |