Functional Clusters Overview top

Species and Available Functional Cluster Experiments

Organisms GO Experiments InterPro Experiments
Amborella trichopoda 1 , 2 , 3 , 4 5 , 6
Ananas comosus 1 , 2 , 3 , 4 5 , 6
Apostasia shenzhenica 1 , 2 , 3 , 4 5 , 6
Arabidopsis thaliana 1 , 2 , 3 , 4 5 , 6
Asparagus officinalis 1 , 2 , 3 , 4 5 , 6
Brachypodium distachyon 1 , 2 , 3 , 4 5 , 6
Calamus simplicifolius 1 , 2 , 3 , 4 5 , 6
Cenchrus americanus 1 , 2 , 3 , 4 5 , 6
Chlamydomonas reinhardtii 1 , 2 , 3 , 4 5 , 6
Elaeis guineensis 1 , 2 , 3 , 4 5 , 6
Hordeum vulgare 1 , 2 , 3 , 4 5 , 6
Lolium perenne Unavailable Unavailable
Marchantia polymorpha 1 , 2 , 3 , 4 5 , 6
Micromonas commoda 1 , 2 , 3 , 4 5 , 6
Miscanthus sinensis 1 , 2 , 3 , 4 5 , 6
Musa acuminata 1 , 2 , 3 , 4 5 , 6
Oropetium thomaeum 1 , 2 , 3 , 4 5 , 6
Oryza brachyantha 1 , 2 , 3 , 4 5 , 6
Oryza sativa ssp. indica 1 , 2 , 3 , 4 5 , 6
Oryza sativa ssp. japonica 1 , 2 , 3 , 4 5 , 6
Phalaenopsis equestris 1 , 2 , 3 , 4 5 , 6
Phyllostachys edulis 1 , 2 , 3 , 4 5 , 6
Physcomitrium patens 1 , 2 , 3 , 4 5 , 6
Picea abies Unavailable Unavailable
Populus trichocarpa 1 , 2 , 3 , 4 5 , 6
Saccharum spontaneum 1 , 2 , 3 , 4 5 , 6
Selaginella moellendorffii 1 , 2 , 3 , 4 5 , 6
Setaria italica 1 , 2 , 3 , 4 5 , 6
Solanum lycopersicum 1 , 2 , 3 , 4 5 , 6
Sorghum bicolor 1 , 2 , 3 , 4 5 , 6
Spirodela polyrhiza 1 , 2 , 3 , 4 5 , 6
Triticum aestivum 1 , 2 , 3 , 4 5 , 6
Triticum turgidum 1 , 2 , 3 , 4 5 , 6
Vitis vinifera 1 , 2 , 3 , 4 5 , 6
Zea mays B73 1 , 2 , 3 , 4 5 , 6
Zea mays B104 1 , 2 , 3 , 4 5 , 6
Zea mays PH207 1 , 2 , 3 , 4 5 , 6
Zostera marina 1 , 2 , 3 , 4 5 , 6
Zoysia japonica ssp. nagirizaki 1 , 2 , 3 , 4 5 , 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 GO Primary GO data only. 2 30 80 0.001 X
2 GO Primary GO data only. 2 30 80 0.001 V
3 GO All GO data. 2 30 80 0.001 X
4 GO All GO data. 2 30 80 0.001 V
5 InterPro No filter applied. 2 30 80 0.001 X
6 InterPro No filter applied. 2 30 80 0.001 V