Functional Clusters Overview

Overview

This tool displays detected clusters of functionally related genes on a per chromosome basis.
Detection of these clusters is done using the CHunter tool, and can be based upon multiple types of functional annotation: GO, InterPro, MapMan, ...

Available Data

OrganismGO ExperimentsInterPro Experiments
Amborella trichopoda1 , 2 , 3 , 45 , 6
Ananas comosus1 , 2 , 3 , 45 , 6
Apostasia shenzhenica1 , 2 , 3 , 45 , 6
Arabidopsis thaliana1 , 2 , 3 , 45 , 6
Asparagus officinalis1 , 2 , 3 , 45 , 6
Brachypodium distachyon1 , 2 , 3 , 45 , 6
Calamus simplicifolius1 , 2 , 3 , 45 , 6
Cenchrus americanus1 , 2 , 3 , 45 , 6
Chlamydomonas reinhardtii1 , 2 , 3 , 45 , 6
Elaeis guineensis1 , 2 , 3 , 45 , 6
Hordeum vulgare1 , 2 , 3 , 45 , 6
Lolium perenneUnavailableUnavailable
Marchantia polymorpha1 , 2 , 3 , 45 , 6
Micromonas commoda1 , 2 , 3 , 45 , 6
Miscanthus sinensis1 , 2 , 3 , 45 , 6
Musa acuminata1 , 2 , 3 , 45 , 6
Oropetium thomaeum1 , 2 , 3 , 45 , 6
Oryza brachyantha1 , 2 , 3 , 45 , 6
Oryza sativa ssp. indica1 , 2 , 3 , 45 , 6
Oryza sativa ssp. japonica1 , 2 , 3 , 45 , 6
Phalaenopsis equestris1 , 2 , 3 , 45 , 6
Phyllostachys edulis1 , 2 , 3 , 45 , 6
Physcomitrella patens1 , 2 , 3 , 45 , 6
Picea abiesUnavailableUnavailable
Populus trichocarpa1 , 2 , 3 , 45 , 6
Saccharum spontaneum1 , 2 , 3 , 45 , 6
Selaginella moellendorffii1 , 2 , 3 , 45 , 6
Setaria italica1 , 2 , 3 , 45 , 6
Solanum lycopersicum1 , 2 , 3 , 45 , 6
Sorghum bicolor1 , 2 , 3 , 45 , 6
Spirodela polyrhiza1 , 2 , 3 , 45 , 6
Triticum aestivum1 , 2 , 3 , 45 , 6
Triticum turgidum1 , 2 , 3 , 45 , 6
Vitis vinifera1 , 2 , 3 , 45 , 6
Zea mays B731 , 2 , 3 , 45 , 6
Zea mays B1041 , 2 , 3 , 45 , 6
Zea mays PH2071 , 2 , 3 , 45 , 6
Zostera marina1 , 2 , 3 , 45 , 6
Zoysia japonica ssp. nagirizaki1 , 2 , 3 , 45 , 6
Exp idData typeData filterMin genes clusterMax genes clusterMax cluster sizeMin e-valueTandems removal
3GOAll GO data.230800.001X
2GOPrimary GO data only.230800.001V
4GOAll GO data.230800.001V
6InterProNo filter applied.230800.001V
1GOPrimary GO data only.230800.001X
5InterProNo filter applied.230800.001X