Saccharum spontaneum

Sugarcane is an important crop species, of which the sucrose is extracted from the stalks. The genome of the wild variant, Saccharum spontaneum, gives insight into the hybrid crops.
Publication:
Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Info and Links
Source | v20190103 |
PLAZA identifier | ssp |
NCBI link | Saccharum spontaneum |
Mitochondrion | Not available |
Chloroplast | Not available |
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Annotations
Page 1 of 4192, showing 20 records out of 83826 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Homologous gene family | Orthologous gene family |
---|---|---|---|---|---|---|---|---|
Sspon.07G0000440-1A | Sspon.07G0000440-1A-mRNA-1 | 1089553 | 1091031 | - | Chr7A | coding | HOM04x5M000020 | ORTHO04x5M000025 |
Sspon.07G0008130-1A | Sspon.07G0008130-1A-mRNA-1 | 22110548 | 22115048 | + | Chr7A | coding | HOM04x5M000280 | ORTHO04x5M000243 |
Sspon.07G0000290-1A | Sspon.07G0000290-1A-mRNA-1 | 761868 | 762191 | - | Chr7A | coding | Orphan Gene | Orphan Gene |
Sspon.07G0009930-1A | Sspon.07G0009930-1A-mRNA-1 | 29061568 | 29061855 | + | Chr7A | coding | HOM04x5M010831 | Orphan Gene |
Sspon.07G0006810-1A | Sspon.07G0006810-1A-mRNA-1 | 17629447 | 17635274 | + | Chr7A | coding | HOM04x5M008442 | ORTHO04x5M010597 |
Sspon.07G0001510-1A | Sspon.07G0001510-1A-mRNA-1 | 3486993 | 3487889 | + | Chr7A | coding | HOM04x5M001379 | ORTHO04x5M001287 |
Sspon.07G0013650-1A | Sspon.07G0013650-1A-mRNA-1 | 49021671 | 49023083 | - | Chr7A | coding | HOM04x5M000026 | ORTHO04x5M000065 |
Sspon.07G0004090-1A | Sspon.07G0004090-1A-mRNA-1 | 10039444 | 10039960 | - | Chr7A | coding | HOM04x5M003586 | ORTHO04x5M001573 |
Sspon.07G0013230-1A | Sspon.07G0013230-1A-mRNA-1 | 47801044 | 47811230 | - | Chr7A | coding | HOM04x5M000560 | ORTHO04x5M000934 |
Sspon.07G0017090-1A | Sspon.07G0017090-1A-mRNA-1 | 61584294 | 61584803 | - | Chr7A | coding | HOM04x5M006389 | ORTHO04x5M007800 |
Sspon.07G0002670-1A | Sspon.07G0002670-1A-mRNA-1 | 6406327 | 6408484 | + | Chr7A | coding | HOM04x5M002749 | ORTHO04x5M003105 |
Sspon.07G0000650-1A | Sspon.07G0000650-1A-mRNA-1 | 1450009 | 1450948 | + | Chr7A | coding | HOM04x5M000132 | ORTHO04x5M000073 |
Sspon.07G0010880-1A | Sspon.07G0010880-1A-mRNA-1 | 36311611 | 36313990 | - | Chr7A | coding | HOM04x5M000498 | ORTHO04x5M000485 |
Sspon.07G0012620-1A | Sspon.07G0012620-1A-mRNA-1 | 44790457 | 44792352 | - | Chr7A | coding | HOM04x5M000467 | ORTHO04x5M020457 |
Sspon.07G0012800-1A | Sspon.07G0012800-1A-mRNA-1 | 46383825 | 46385248 | - | Chr7A | coding | HOM04x5M000238 | ORTHO04x5M000402 |
Sspon.07G0000560-1A | Sspon.07G0000560-1A-mRNA-1 | 1286151 | 1290045 | + | Chr7A | coding | HOM04x5M000764 | ORTHO04x5M000667 |
Sspon.07G0004450-1A | Sspon.07G0004450-1A-mRNA-1 | 11202750 | 11206199 | + | Chr7A | coding | HOM04x5M003032 | ORTHO04x5M003636 |
Sspon.07G0004840-1A | Sspon.07G0004840-1A-mRNA-1 | 12284077 | 12285525 | - | Chr7A | coding | HOM04x5M000035 | ORTHO04x5M001339 |
Sspon.07G0018230-1A | Sspon.07G0018230-1A-mRNA-1 | 65594417 | 65596636 | + | Chr7A | coding | HOM04x5M002277 | ORTHO04x5M007984 |
Sspon.05G0019940-1P | Sspon.05G0019940-1P-mRNA-1 | 61506493 | 61508967 | - | Chr7A | coding | HOM04x5M001848 | ORTHO04x5M002105 |