Functional clusters

Information

  • Type Gene Ontology
  • Description catalytic activity, acting on a nucleic acid

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr2 3 CH_camsi_665 8 24 0.000274722
Physcomitrium patens Chr15 3 CH_ppa_151 5 5 0.000195515
Physcomitrium patens Chr01 3 CH_ppa_152 5 5 0.000195515
Physcomitrium patens Chr10 3 CH_ppa_61 6 7 0.00000441507
Physcomitrium patens Chr16 3 CH_ppa_74 6 7 0.0000303072
Prunus persica Pp06 3 CH_ppe_355 6 9 0.000148363
Papaver somniferum NC_039366.1 3 CH_pso_533 7 10 0.000170895
Papaver somniferum NC_039364.1 3 CH_pso_620 9 22 0.000455736
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_679 12 74 0.000371583
Sequoiadendron giganteum chr2 3 CH_sgi_1245 5 6 0.000352475
Camellia sinensis var. sinensis Chr2 4 CH_camsi_665 8 24 0.000274722
Physcomitrium patens Chr15 4 CH_ppa_151 5 5 0.000195515
Physcomitrium patens Chr01 4 CH_ppa_152 5 5 0.000195515
Physcomitrium patens Chr10 4 CH_ppa_61 6 7 0.00000441507
Physcomitrium patens Chr16 4 CH_ppa_74 6 7 0.0000303072
Prunus persica Pp06 4 CH_ppe_355 6 9 0.000148363
Papaver somniferum NC_039366.1 4 CH_pso_533 7 10 0.000170895
Papaver somniferum NC_039364.1 4 CH_pso_620 9 22 0.000455736
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_679 12 74 0.000371583
Sequoiadendron giganteum chr2 4 CH_sgi_1245 5 6 0.000352475

Available child term results

Ontology identifier Description Number of clusters
GO:0000175 3'-5'-exoribonuclease activity 2
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity 6
GO:0000213 tRNA-intron endonuclease activity 10
GO:0000215 tRNA 2'-phosphotransferase activity 4
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity 2
GO:0001054 RNA polymerase I activity 2
GO:0001055 RNA polymerase II activity 8
GO:0002161 aminoacyl-tRNA editing activity 4
GO:0003678 DNA helicase activity 4
GO:0003689 DNA clamp loader activity 8
GO:0003720 telomerase activity 2
GO:0003721 telomerase RNA reverse transcriptase activity 24
GO:0003724 RNA helicase activity 4
GO:0003886 DNA (cytosine-5-)-methyltransferase activity 2
GO:0003887 DNA-directed DNA polymerase activity 6
GO:0003896 DNA primase activity 4
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 112
GO:0003904 deoxyribodipyrimidine photo-lyase activity 2
GO:0003905 alkylbase DNA N-glycosylase activity 2
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 10
GO:0003910 DNA ligase (ATP) activity 26
GO:0003913 DNA photolyase activity 8
GO:0003916 DNA topoisomerase activity 10
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 38
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 14
GO:0003968 RNA-directed 5'-3' RNA polymerase activity 126
GO:0003972 RNA ligase (ATP) activity 32
GO:0004045 aminoacyl-tRNA hydrolase activity 12
GO:0004386 helicase activity 82
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity 10
GO:0004521 endoribonuclease activity 8
GO:0004523 RNA-DNA hybrid ribonuclease activity 56
GO:0004525 ribonuclease III activity 60
GO:0004534 5'-3' exoribonuclease activity 2
GO:0004535 poly(A)-specific ribonuclease activity 80
GO:0004536 deoxyribonuclease activity 2
GO:0004540 ribonuclease activity 32
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 24
GO:0004813 alanine-tRNA ligase activity 2
GO:0004814 arginine-tRNA ligase activity 2
GO:0004815 aspartate-tRNA ligase activity 4
GO:0004820 glycine-tRNA ligase activity 4
GO:0004821 histidine-tRNA ligase activity 2
GO:0004822 isoleucine-tRNA ligase activity 18
GO:0004823 leucine-tRNA ligase activity 4
GO:0004824 lysine-tRNA ligase activity 2
GO:0004826 phenylalanine-tRNA ligase activity 4
GO:0004828 serine-tRNA ligase activity 4
GO:0004829 threonine-tRNA ligase activity 2
GO:0004831 tyrosine-tRNA ligase activity 8
GO:0004832 valine-tRNA ligase activity 6
GO:0004844 uracil DNA N-glycosylase activity 10
GO:0008173 RNA methyltransferase activity 2
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity 20
GO:0008296 3'-5'-exodeoxyribonuclease activity 2
GO:0008309 double-stranded DNA exodeoxyribonuclease activity 22
GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity 8
GO:0008419 RNA lariat debranching enzyme activity 2
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity 6
GO:0008725 DNA-3-methyladenine glycosylase activity 2
GO:0008883 glutamyl-tRNA reductase activity 12
GO:0015616 DNA translocase activity 6
GO:0016423 tRNA (guanine) methyltransferase activity 2
GO:0016428 tRNA (cytosine-5-)-methyltransferase activity 4
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 12
GO:0016435 rRNA (guanine) methyltransferase activity 8
GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters 4
GO:0017005 3'-tyrosyl-DNA phosphodiesterase activity 2
GO:0017108 5'-flap endonuclease activity 2
GO:0017116 single-stranded DNA helicase activity 4
GO:0030598 rRNA N-glycosylase activity 46
GO:0032574 5'-3' RNA helicase activity 4
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity 12
GO:0033897 ribonuclease T2 activity 184
GO:0034335 DNA negative supercoiling activity 4
GO:0035312 5'-3' exodeoxyribonuclease activity 8
GO:0035514 DNA demethylase activity 28
GO:0043138 3'-5' DNA helicase activity 18
GO:0043139 5'-3' DNA helicase activity 24
GO:0043765 T/G mismatch-specific endonuclease activity 66
GO:0044748 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing 4
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity 14
GO:0048256 flap endonuclease activity 4
GO:0048257 3'-flap endonuclease activity 2
GO:0050265 RNA uridylyltransferase activity 2
GO:0051499 D-aminoacyl-tRNA deacylase activity 20
GO:0051575 5'-deoxyribose-5-phosphate lyase activity 2
GO:0051747 cytosine C-5 DNA demethylase activity 2
GO:0052381 tRNA dimethylallyltransferase activity 20
GO:0052907 23S rRNA (adenine(1618)-N(6))-methyltransferase activity 2
GO:0070037 rRNA (pseudouridine) methyltransferase activity 30
GO:0070042 rRNA (uridine-N3-)-methyltransferase activity 6
GO:0071164 RNA trimethylguanosine synthase activity 6
GO:0102521 tRNA-4-demethylwyosine synthase activity 4
GO:0106050 tRNA 2'-O-methyltransferase activity 4
GO:0140097 catalytic activity, acting on DNA 6
GO:0140098 catalytic activity, acting on RNA 2
GO:0140102 catalytic activity, acting on a rRNA 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001