Functional clusters

Information

  • Type Gene Ontology
  • Description helicase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR03 3 CH_aox_253 4 6 0.000429468
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 3 CH_arhy_187 6 6 0.000000000214052
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 3 CH_arhy_414 4 4 0.000014747
Brassica napus C04 3 CH_bna_128 7 14 0.00000000339236
Camellia sinensis var. sinensis Chr13 3 CH_camsi_662 7 63 0.000262465
Cannabis sativa NC_044373.1 3 CH_cansat_176 8 64 0.0000186638
Citrus clementina scaffold_9 3 CH_ccl_144 7 18 0.0000000320629
Carpinus fangiana Cfa03 3 CH_cfa_178 4 4 0.0000096625
Carica papaya supercontig_108 3 CH_cpa_242 4 8 0.000296665
Davidia involucrata GWHABJS00000012 3 CH_din_22 9 10 2.95005e-17
Erigeron canadensis Conyza_canadensis_scaffold:1 3 CH_eca_12 12 22 2.85362e-17
Erigeron canadensis Conyza_canadensis_scaffold:6 3 CH_eca_348 4 5 0.000239553
Eucalyptus grandis Chr07 3 CH_egr_112 13 34 3.65271e-19
Eucalyptus grandis Chr06 3 CH_egr_213 7 7 0.000000000000267363
Erythranthe guttata scaffold_8 3 CH_egut_264 4 5 0.0000655417
Helianthus annuus HanXRQChr14 3 CH_han_311 5 8 0.000000812059
Lupinus albus Lalb_Chr06 3 CH_lal_257 4 4 0.000072297
Lotus japonicus Contig00141 3 CH_lja_59 6 6 0.000000000706449
Lactuca sativa Lsat_1_v8_lg_8 3 CH_lsa_399 4 7 0.000176224
Medicago truncatula chr5 3 CH_mtr_311 7 16 0.000000215209
Nelumbo nucifera chr4 3 CH_nnu_76 6 13 0.0000000223289
Nicotiana tabacum Nitab4.5_0000091 3 CH_nta_153 3 3 0.00078891
Petunia axillaris Peaxi162Scf00126 3 CH_pax_236 4 7 0.000201632
Punica granatum NC_045129.1 3 CH_pgr_330 5 14 0.000235943
Pisum sativum chr2LG1 3 CH_psa_182 4 5 0.0000199244
Populus trichocarpa Chr04 3 CH_ptr_161 6 9 0.0000000134508
Populus trichocarpa Chr17 3 CH_ptr_300 4 5 0.0000496009
Quercus lobata 4 3 CH_qlo_1024 4 8 0.000912851
Quercus lobata 3 3 CH_qlo_409 6 10 0.0000000487541
Quercus lobata 5 3 CH_qlo_640 4 4 0.0000132203
Rosa chinensis RcHm_v2.0_Chr3 3 CH_rch_454 6 32 0.0000206213
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_519 4 6 0.0000474065
Rhododendron simsii chr08 3 CH_rsi_130 6 6 0.000000000246787
Salix brachista GWHAAZH00000004 3 CH_sbr_248 4 6 0.0000670726
Simmondsia chinensis GWHAASQ00000002 3 CH_sci_255 4 8 0.000659536
Sechium edule LG06 3 CH_sed_135 6 22 0.00000872104
Sequoiadendron giganteum chr1 3 CH_sgi_1174 6 35 0.00019334
Sequoiadendron giganteum chr3 3 CH_sgi_700 5 7 0.0000007232
Sequoiadendron giganteum chr3 3 CH_sgi_923 5 13 0.0000434855
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_18 9 12 0.0000000000000141413
Vitis vinifera chr16 3 CH_vvi_205 4 4 0.00000607116
Aquilegia oxysepala CHR03 4 CH_aox_253 4 6 0.000429468
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 4 CH_arhy_187 6 6 0.000000000214052
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 4 CH_arhy_414 4 4 0.000014747
Brassica napus C04 4 CH_bna_128 7 14 0.00000000339236
Camellia sinensis var. sinensis Chr13 4 CH_camsi_662 7 63 0.000262465
Cannabis sativa NC_044373.1 4 CH_cansat_176 8 64 0.0000186638
Citrus clementina scaffold_9 4 CH_ccl_144 7 18 0.0000000320629
Carpinus fangiana Cfa03 4 CH_cfa_178 4 4 0.0000096625
Carica papaya supercontig_108 4 CH_cpa_242 4 8 0.000296665
Davidia involucrata GWHABJS00000012 4 CH_din_22 9 10 2.95005e-17
Erigeron canadensis Conyza_canadensis_scaffold:1 4 CH_eca_12 12 22 2.85362e-17
Erigeron canadensis Conyza_canadensis_scaffold:6 4 CH_eca_348 4 5 0.000239553
Eucalyptus grandis Chr07 4 CH_egr_112 13 34 3.65271e-19
Eucalyptus grandis Chr06 4 CH_egr_213 7 7 0.000000000000267363
Erythranthe guttata scaffold_8 4 CH_egut_264 4 5 0.0000655417
Helianthus annuus HanXRQChr14 4 CH_han_311 5 8 0.000000812059
Lupinus albus Lalb_Chr06 4 CH_lal_257 4 4 0.000072297
Lotus japonicus Contig00141 4 CH_lja_59 6 6 0.000000000706449
Lactuca sativa Lsat_1_v8_lg_8 4 CH_lsa_399 4 7 0.000176224
Medicago truncatula chr5 4 CH_mtr_311 7 16 0.000000215209
Nelumbo nucifera chr4 4 CH_nnu_76 6 13 0.0000000223289
Nicotiana tabacum Nitab4.5_0000091 4 CH_nta_153 3 3 0.00078891
Petunia axillaris Peaxi162Scf00126 4 CH_pax_236 4 7 0.000201632
Punica granatum NC_045129.1 4 CH_pgr_330 5 14 0.000235943
Pisum sativum chr2LG1 4 CH_psa_182 4 5 0.0000199244
Populus trichocarpa Chr04 4 CH_ptr_161 6 9 0.0000000134508
Populus trichocarpa Chr17 4 CH_ptr_300 4 5 0.0000496009
Quercus lobata 4 4 CH_qlo_1024 4 8 0.000912851
Quercus lobata 3 4 CH_qlo_409 6 10 0.0000000487541
Quercus lobata 5 4 CH_qlo_640 4 4 0.0000132203
Rosa chinensis RcHm_v2.0_Chr3 4 CH_rch_454 6 32 0.0000206213
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_519 4 6 0.0000474065
Rhododendron simsii chr08 4 CH_rsi_130 6 6 0.000000000246787
Salix brachista GWHAAZH00000004 4 CH_sbr_248 4 6 0.0000670726
Simmondsia chinensis GWHAASQ00000002 4 CH_sci_255 4 8 0.000659536
Sechium edule LG06 4 CH_sed_135 6 22 0.00000872104
Sequoiadendron giganteum chr1 4 CH_sgi_1174 6 35 0.00019334
Sequoiadendron giganteum chr3 4 CH_sgi_700 5 7 0.0000007232
Sequoiadendron giganteum chr3 4 CH_sgi_923 5 13 0.0000434855
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_18 9 12 0.0000000000000141413
Vitis vinifera chr16 4 CH_vvi_205 4 4 0.00000607116

Available child term results

Ontology identifier Description Number of clusters
GO:0003678 DNA helicase activity 4
GO:0003724 RNA helicase activity 4
GO:0017116 single-stranded DNA helicase activity 4
GO:0032574 5'-3' RNA helicase activity 4
GO:0043138 3'-5' DNA helicase activity 18
GO:0043139 5'-3' DNA helicase activity 24

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001