Functional clusters

Information

  • Type Gene Ontology
  • Description catalytic activity, acting on DNA

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Physcomitrium patens Chr14 3 CH_ppa_34 5 6 0.000000296299
Phaseolus vulgaris Chr05 3 CH_pvu_378 5 27 0.000773853
Sequoiadendron giganteum chr9 3 CH_sgi_1255 5 24 0.000435298
Physcomitrium patens Chr14 4 CH_ppa_34 5 6 0.000000296299
Phaseolus vulgaris Chr05 4 CH_pvu_378 5 27 0.000773853
Sequoiadendron giganteum chr9 4 CH_sgi_1255 5 24 0.000435298

Available child term results

Ontology identifier Description Number of clusters
GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity 2
GO:0003678 DNA helicase activity 4
GO:0003689 DNA clamp loader activity 8
GO:0003720 telomerase activity 2
GO:0003721 telomerase RNA reverse transcriptase activity 24
GO:0003886 DNA (cytosine-5-)-methyltransferase activity 2
GO:0003887 DNA-directed DNA polymerase activity 6
GO:0003904 deoxyribodipyrimidine photo-lyase activity 2
GO:0003905 alkylbase DNA N-glycosylase activity 2
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 10
GO:0003910 DNA ligase (ATP) activity 26
GO:0003913 DNA photolyase activity 8
GO:0003916 DNA topoisomerase activity 10
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 38
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 14
GO:0004536 deoxyribonuclease activity 2
GO:0004844 uracil DNA N-glycosylase activity 10
GO:0008296 3'-5'-exodeoxyribonuclease activity 2
GO:0008309 double-stranded DNA exodeoxyribonuclease activity 22
GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity 8
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity 6
GO:0008725 DNA-3-methyladenine glycosylase activity 2
GO:0015616 DNA translocase activity 6
GO:0017005 3'-tyrosyl-DNA phosphodiesterase activity 2
GO:0017108 5'-flap endonuclease activity 2
GO:0017116 single-stranded DNA helicase activity 4
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity 12
GO:0034335 DNA negative supercoiling activity 4
GO:0035312 5'-3' exodeoxyribonuclease activity 8
GO:0035514 DNA demethylase activity 28
GO:0043138 3'-5' DNA helicase activity 18
GO:0043139 5'-3' DNA helicase activity 24
GO:0043765 T/G mismatch-specific endonuclease activity 66
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity 14
GO:0048256 flap endonuclease activity 4
GO:0048257 3'-flap endonuclease activity 2
GO:0051575 5'-deoxyribose-5-phosphate lyase activity 2
GO:0051747 cytosine C-5 DNA demethylase activity 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001