Functional clusters
Information
- Type Gene Ontology
- Description ribonuclease activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group11 | 3 | CH_ach_146 | 6 | 37 | 0.000101394 |
| Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_234 | 8 | 78 | 0.000184668 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 3 | CH_can_322 | 4 | 6 | 0.0000910783 |
| Citrus clementina | scaffold_8 | 3 | CH_ccl_137 | 5 | 5 | 0.0000000149291 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_157 | 8 | 60 | 0.00000247892 |
| Durio zibethinus | NW_019168481.1 | 3 | CH_dzi_40 | 8 | 11 | 0.00000000000130086 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_587 | 4 | 4 | 0.00000683241 |
| Glycine max | Gm19 | 3 | CH_gma_533 | 3 | 3 | 0.000926064 |
| Manihot esculenta | Chromosome08 | 3 | CH_mes_203 | 4 | 4 | 0.00000190875 |
| Medicago truncatula | chr1 | 3 | CH_mtr_408 | 4 | 4 | 0.0000069886 |
| Oryza sativa ssp. japonica | chr11 | 3 | CH_osa_112 | 5 | 5 | 0.0000000131384 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_303 | 7 | 7 | 0.00000000000443507 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_202 | 5 | 10 | 0.00000310776 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 3 | CH_tpr_298 | 4 | 6 | 0.000305415 |
| Vitis vinifera | chr7 | 3 | CH_vvi_382 | 3 | 3 | 0.000475072 |
| Vitis vinifera | chr14 | 3 | CH_vvi_383 | 3 | 3 | 0.000475072 |
| Actinidia chinensis | Lachesis_group11 | 4 | CH_ach_146 | 6 | 37 | 0.000101394 |
| Arabidopsis lyrata | scaffold_5 | 4 | CH_aly_234 | 8 | 78 | 0.000184668 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 4 | CH_can_322 | 4 | 6 | 0.0000910783 |
| Citrus clementina | scaffold_8 | 4 | CH_ccl_137 | 5 | 5 | 0.0000000149291 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_157 | 8 | 60 | 0.00000247892 |
| Durio zibethinus | NW_019168481.1 | 4 | CH_dzi_40 | 8 | 11 | 0.00000000000130086 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_587 | 4 | 4 | 0.00000683241 |
| Glycine max | Gm19 | 4 | CH_gma_533 | 3 | 3 | 0.000926064 |
| Manihot esculenta | Chromosome08 | 4 | CH_mes_203 | 4 | 4 | 0.00000190875 |
| Medicago truncatula | chr1 | 4 | CH_mtr_408 | 4 | 4 | 0.0000069886 |
| Oryza sativa ssp. japonica | chr11 | 4 | CH_osa_112 | 5 | 5 | 0.0000000131384 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_303 | 7 | 7 | 0.00000000000443507 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_202 | 5 | 10 | 0.00000310776 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 4 | CH_tpr_298 | 4 | 6 | 0.000305415 |
| Vitis vinifera | chr7 | 4 | CH_vvi_382 | 3 | 3 | 0.000475072 |
| Vitis vinifera | chr14 | 4 | CH_vvi_383 | 3 | 3 | 0.000475072 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000175 | 3'-5'-exoribonuclease activity | 2 |
| GO:0000213 | tRNA-intron endonuclease activity | 10 |
| GO:0004521 | endoribonuclease activity | 8 |
| GO:0004523 | RNA-DNA hybrid ribonuclease activity | 56 |
| GO:0004525 | ribonuclease III activity | 60 |
| GO:0004534 | 5'-3' exoribonuclease activity | 2 |
| GO:0004535 | poly(A)-specific ribonuclease activity | 80 |
| GO:0008419 | RNA lariat debranching enzyme activity | 2 |
| GO:0016896 | exoribonuclease activity, producing 5'-phosphomonoesters | 4 |
| GO:0033897 | ribonuclease T2 activity | 184 |
| GO:0044748 | 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |