Functional clusters
Information
- Type Gene Ontology
- Description RNA-DNA hybrid ribonuclease activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Davidia involucrata | GWHABJS00000010 | 3 | CH_din_250 | 3 | 3 | 0.0000735386 |
| Erythranthe guttata | scaffold_14 | 3 | CH_egut_196 | 3 | 3 | 0.00000174971 |
| Helianthus annuus | HanXRQChr13 | 3 | CH_han_10 | 10 | 12 | 1.80027e-27 |
| Lupinus albus | Lalb_Chr21 | 3 | CH_lal_198 | 3 | 3 | 0.0000135355 |
| Lotus japonicus | chr6 | 3 | CH_lja_256 | 4 | 6 | 0.000179862 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 3 | CH_lsa_301 | 3 | 5 | 0.0000221813 |
| Magnolia biondii | Chr04 | 3 | CH_mbi_304 | 12 | 40 | 0.00000314568 |
| Magnolia biondii | Chr15 | 3 | CH_mbi_305 | 11 | 32 | 0.00000366282 |
| Magnolia biondii | Chr04 | 3 | CH_mbi_339 | 8 | 14 | 0.0000094827 |
| Malus domestica | Chr11 | 3 | CH_mdo_196 | 4 | 6 | 0.0000000582396 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_137 | 5 | 7 | 0.000000127337 |
| Punica granatum | NC_045129.1 | 3 | CH_pgr_215 | 6 | 30 | 0.00000972776 |
| Punica granatum | NC_045131.1 | 3 | CH_pgr_344 | 4 | 10 | 0.000436667 |
| Papaver somniferum | NC_039364.1 | 3 | CH_pso_347 | 14 | 74 | 0.00000352365 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_435 | 5 | 9 | 0.0000123381 |
| Striga asiatica | scaffold7 | 3 | CH_sas_97 | 3 | 5 | 0.000383364 |
| Salix brachista | GWHAAZH00000017 | 3 | CH_sbr_117 | 4 | 4 | 0.0000000554137 |
| Simmondsia chinensis | GWHAASQ00000014 | 3 | CH_sci_227 | 4 | 10 | 0.000276684 |
| Sapria himalayana | scaffold63_2876970 | 3 | CH_shi_102 | 7 | 33 | 0.00000379127 |
| Sapria himalayana | scaffold83_1810967 | 3 | CH_shi_171 | 4 | 5 | 0.0000629777 |
| Sapria himalayana | scaffold92_1596972 | 3 | CH_shi_177 | 6 | 29 | 0.000100848 |
| Sapria himalayana | scaffold15_12544384 | 3 | CH_shi_44 | 7 | 16 | 0.0000000108137 |
| Sapria himalayana | scaffold133_675996 | 3 | CH_shi_66 | 6 | 11 | 0.000000104764 |
| Sapria himalayana | scaffold140_625291 | 3 | CH_shi_69 | 6 | 12 | 0.000000208762 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_557 | 3 | 7 | 0.000732492 |
| Solanum pennellii | Spenn-ch11 | 3 | CH_spe_191 | 8 | 30 | 0.00000229233 |
| Solanum tuberosum | ST4.03ch11 | 3 | CH_stu_172 | 6 | 14 | 0.0000000146498 |
| Solanum tuberosum | ST4.03ch00 | 3 | CH_stu_183 | 6 | 15 | 0.0000000243707 |
| Davidia involucrata | GWHABJS00000010 | 4 | CH_din_250 | 3 | 3 | 0.0000735386 |
| Erythranthe guttata | scaffold_14 | 4 | CH_egut_196 | 3 | 3 | 0.00000174971 |
| Helianthus annuus | HanXRQChr13 | 4 | CH_han_10 | 10 | 12 | 1.80027e-27 |
| Lupinus albus | Lalb_Chr21 | 4 | CH_lal_198 | 3 | 3 | 0.0000135355 |
| Lotus japonicus | chr6 | 4 | CH_lja_256 | 4 | 6 | 0.000179862 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 4 | CH_lsa_301 | 3 | 5 | 0.0000221813 |
| Magnolia biondii | Chr04 | 4 | CH_mbi_304 | 12 | 40 | 0.00000314568 |
| Magnolia biondii | Chr15 | 4 | CH_mbi_305 | 11 | 32 | 0.00000366282 |
| Magnolia biondii | Chr04 | 4 | CH_mbi_339 | 8 | 14 | 0.0000094827 |
| Malus domestica | Chr11 | 4 | CH_mdo_196 | 4 | 6 | 0.0000000582396 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_137 | 5 | 7 | 0.000000127337 |
| Punica granatum | NC_045129.1 | 4 | CH_pgr_215 | 6 | 30 | 0.00000972776 |
| Punica granatum | NC_045131.1 | 4 | CH_pgr_344 | 4 | 10 | 0.000436667 |
| Papaver somniferum | NC_039364.1 | 4 | CH_pso_347 | 14 | 74 | 0.00000352365 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_435 | 5 | 9 | 0.0000123381 |
| Striga asiatica | scaffold7 | 4 | CH_sas_97 | 3 | 5 | 0.000383364 |
| Salix brachista | GWHAAZH00000017 | 4 | CH_sbr_117 | 4 | 4 | 0.0000000554137 |
| Simmondsia chinensis | GWHAASQ00000014 | 4 | CH_sci_227 | 4 | 10 | 0.000276684 |
| Sapria himalayana | scaffold63_2876970 | 4 | CH_shi_102 | 7 | 33 | 0.00000379127 |
| Sapria himalayana | scaffold83_1810967 | 4 | CH_shi_171 | 4 | 5 | 0.0000629777 |
| Sapria himalayana | scaffold92_1596972 | 4 | CH_shi_177 | 6 | 29 | 0.000100848 |
| Sapria himalayana | scaffold15_12544384 | 4 | CH_shi_44 | 7 | 16 | 0.0000000108137 |
| Sapria himalayana | scaffold133_675996 | 4 | CH_shi_66 | 6 | 11 | 0.000000104764 |
| Sapria himalayana | scaffold140_625291 | 4 | CH_shi_69 | 6 | 12 | 0.000000208762 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_557 | 3 | 7 | 0.000732492 |
| Solanum pennellii | Spenn-ch11 | 4 | CH_spe_191 | 8 | 30 | 0.00000229233 |
| Solanum tuberosum | ST4.03ch11 | 4 | CH_stu_172 | 6 | 14 | 0.0000000146498 |
| Solanum tuberosum | ST4.03ch00 | 4 | CH_stu_183 | 6 | 15 | 0.0000000243707 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |