Functional clusters
Information
- Type Gene Ontology
- Description ribonuclease III activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 3 | CH_aar_188 | 3 | 8 | 0.000253971 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 3 | CH_arhy_505 | 3 | 5 | 0.000113327 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 3 | CH_atr_138 | 3 | 3 | 0.00000344585 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 3 | CH_bvu_150 | 3 | 4 | 0.0000230217 |
| Camellia sinensis var. sinensis | Chr7 | 3 | CH_camsi_291 | 5 | 32 | 0.000000350957 |
| Coffea canephora | chr2 | 3 | CH_ccan_54 | 4 | 19 | 0.00000000213709 |
| Carya illinoinensis | Chr08 | 3 | CH_cil_134 | 5 | 10 | 0.000000000121682 |
| Carica papaya | supercontig_87 | 3 | CH_cpa_132 | 3 | 6 | 0.0000446934 |
| Davidia involucrata | GWHABJS00000009 | 3 | CH_din_61 | 5 | 8 | 0.0000000000407036 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 3 | CH_eca_177 | 3 | 3 | 0.00000292671 |
| Eucalyptus grandis | Chr06 | 3 | CH_egr_607 | 3 | 4 | 0.0000139716 |
| Gossypium hirsutum | A04 | 3 | CH_ghi_339 | 3 | 3 | 0.00000639973 |
| Gossypium raimondii | Chr04 | 3 | CH_gra_202 | 3 | 5 | 0.0000417471 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_302 | 3 | 5 | 0.0000221813 |
| Manihot esculenta | Chromosome12 | 3 | CH_mes_247 | 3 | 5 | 0.0000159883 |
| Medicago truncatula | chr3 | 3 | CH_mtr_194 | 5 | 12 | 0.00000000111062 |
| Nicotiana tabacum | Nitab4.5_0000482 | 3 | CH_nta_67 | 3 | 5 | 0.0000216585 |
| Prunus persica | Pp04 | 3 | CH_ppe_104 | 5 | 6 | 0.0000000000119362 |
| Prunus persica | Pp07 | 3 | CH_ppe_283 | 3 | 4 | 0.0000272328 |
| Quercus lobata | 8 | 3 | CH_qlo_343 | 4 | 4 | 0.0000000072462 |
| Salvia bowleyana | GWHASIU00000005 | 3 | CH_sbo_277 | 3 | 4 | 0.0000120321 |
| Salvia bowleyana | GWHASIU00000004 | 3 | CH_sbo_278 | 3 | 4 | 0.0000120321 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_684 | 4 | 6 | 0.00000042733 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_911 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_95 | 9 | 10 | 9.52788e-23 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_2 | 18 | 38 | 8.61472e-39 |
| Solanum lycopersicum | SL4.0ch11 | 3 | CH_sly_374 | 3 | 3 | 0.0000837933 |
| Solanum pennellii | Spenn-ch11 | 3 | CH_spe_202 | 3 | 3 | 0.00000338311 |
| Trochodendron aralioides | group0 | 3 | CH_tar_78 | 4 | 4 | 0.00000000474923 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 3 | CH_tpr_148 | 3 | 3 | 0.000008329 |
| Aethionema arabicum | LG-5 | 4 | CH_aar_188 | 3 | 8 | 0.000253971 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 4 | CH_arhy_505 | 3 | 5 | 0.000113327 |
| Amborella trichopoda | AmTr_v1.0_scaffold00007 | 4 | CH_atr_138 | 3 | 3 | 0.00000344585 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 4 | CH_bvu_150 | 3 | 4 | 0.0000230217 |
| Camellia sinensis var. sinensis | Chr7 | 4 | CH_camsi_291 | 5 | 32 | 0.000000350957 |
| Coffea canephora | chr2 | 4 | CH_ccan_54 | 4 | 19 | 0.00000000213709 |
| Carya illinoinensis | Chr08 | 4 | CH_cil_134 | 5 | 10 | 0.000000000121682 |
| Carica papaya | supercontig_87 | 4 | CH_cpa_132 | 3 | 6 | 0.0000446934 |
| Davidia involucrata | GWHABJS00000009 | 4 | CH_din_61 | 5 | 8 | 0.0000000000407036 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 4 | CH_eca_177 | 3 | 3 | 0.00000292671 |
| Eucalyptus grandis | Chr06 | 4 | CH_egr_607 | 3 | 4 | 0.0000139716 |
| Gossypium hirsutum | A04 | 4 | CH_ghi_339 | 3 | 3 | 0.00000639973 |
| Gossypium raimondii | Chr04 | 4 | CH_gra_202 | 3 | 5 | 0.0000417471 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_302 | 3 | 5 | 0.0000221813 |
| Manihot esculenta | Chromosome12 | 4 | CH_mes_247 | 3 | 5 | 0.0000159883 |
| Medicago truncatula | chr3 | 4 | CH_mtr_194 | 5 | 12 | 0.00000000111062 |
| Nicotiana tabacum | Nitab4.5_0000482 | 4 | CH_nta_67 | 3 | 5 | 0.0000216585 |
| Prunus persica | Pp04 | 4 | CH_ppe_104 | 5 | 6 | 0.0000000000119362 |
| Prunus persica | Pp07 | 4 | CH_ppe_283 | 3 | 4 | 0.0000272328 |
| Quercus lobata | 8 | 4 | CH_qlo_343 | 4 | 4 | 0.0000000072462 |
| Salvia bowleyana | GWHASIU00000005 | 4 | CH_sbo_277 | 3 | 4 | 0.0000120321 |
| Salvia bowleyana | GWHASIU00000004 | 4 | CH_sbo_278 | 3 | 4 | 0.0000120321 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_684 | 4 | 6 | 0.00000042733 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_911 | 3 | 3 | 0.0000325333 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_95 | 9 | 10 | 9.52788e-23 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_2 | 18 | 38 | 8.61472e-39 |
| Solanum lycopersicum | SL4.0ch11 | 4 | CH_sly_374 | 3 | 3 | 0.0000837933 |
| Solanum pennellii | Spenn-ch11 | 4 | CH_spe_202 | 3 | 3 | 0.00000338311 |
| Trochodendron aralioides | group0 | 4 | CH_tar_78 | 4 | 4 | 0.00000000474923 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 4 | CH_tpr_148 | 3 | 3 | 0.000008329 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |