Functional clusters
Information
- Type Gene Ontology
- Description RNA-directed 5'-3' RNA polymerase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 3 | CH_aag_30 | 4 | 4 | 0.00000000110898 |
| Acer truncatum | chr7 | 3 | CH_acertr_46 | 4 | 4 | 0.0000000000157678 |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_132 | 3 | 5 | 0.00000228668 |
| Avicennia marina | ScioBoG_102831_HRSCAF_103044 | 3 | CH_ama_26 | 3 | 3 | 0.000000624499 |
| Brassica carinata | ChrC09 | 3 | CH_bca_1 | 14 | 38 | 1.6332e-35 |
| Brassica carinata | ChrB03 | 3 | CH_bca_374 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC06 | 3 | CH_bca_746 | 3 | 9 | 0.000313664 |
| Brassica napus | A07 | 3 | CH_bna_196 | 4 | 8 | 0.000000182093 |
| Brassica napus | C01 | 3 | CH_bna_2 | 16 | 44 | 1.17878e-39 |
| Brassica napus | C07 | 3 | CH_bna_516 | 3 | 7 | 0.000239279 |
| Brassica oleracea | C7 | 3 | CH_bol_345 | 3 | 10 | 0.000388495 |
| Brassica oleracea | C1 | 3 | CH_bol_4 | 12 | 30 | 2.48238e-30 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 3 | CH_bvu_44 | 4 | 4 | 0.000000000119188 |
| Camellia sinensis var. sinensis | Chr6 | 3 | CH_camsi_9 | 10 | 13 | 1.81958e-30 |
| Cannabis sativa | NC_044376.1 | 3 | CH_cansat_131 | 3 | 3 | 0.000000362202 |
| Capsicum annuum | PGAv.1.6.scaffold160 | 3 | CH_can_183 | 3 | 3 | 0.000000573281 |
| Corylus avellana | 9 | 3 | CH_cav_23 | 6 | 7 | 8.76406e-17 |
| Coffea canephora | chr11 | 3 | CH_ccan_72 | 4 | 80 | 0.0000000416198 |
| Ceratophyllum demersum | 3 | 3 | CH_cde_43 | 3 | 3 | 0.000000327496 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_161 | 3 | 3 | 0.00000391479 |
| Carpinus fangiana | Cfa06 | 3 | CH_cfa_53 | 5 | 8 | 0.0000000000414592 |
| Cardamine hirsuta | Chr3 | 3 | CH_chi_57 | 4 | 4 | 0.000000000034678 |
| Carya illinoinensis | Chr06 | 3 | CH_cil_18 | 8 | 9 | 4.93491e-24 |
| Cucumis melo | chr10 | 3 | CH_cme_122 | 3 | 4 | 0.00000224265 |
| Carica papaya | supercontig_2 | 3 | CH_cpa_35 | 4 | 8 | 0.00000000631168 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2862 | 3 | CH_cqu_199 | 3 | 3 | 0.000000963157 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3799 | 3 | CH_cqu_200 | 3 | 3 | 0.000000963157 |
| Capsella rubella | scaffold_3 | 3 | CH_cru_324 | 2 | 2 | 0.000731154 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_697 | 3 | 5 | 0.00005853 |
| Eutrema salsugineum | scaffold_12 | 3 | CH_esa_263 | 2 | 2 | 0.000761499 |
| Fragaria x ananassa | Fvb4-1 | 3 | CH_fan_137 | 4 | 8 | 0.0000000981053 |
| Fragaria x ananassa | Fvb4-4 | 3 | CH_fan_344 | 4 | 32 | 0.0000500834 |
| Fragaria x ananassa | Fvb2-1 | 3 | CH_fan_87 | 4 | 4 | 0.00000000140297 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_49 | 5 | 7 | 0.000000000001502 |
| Helianthus annuus | HanXRQChr16 | 3 | CH_han_147 | 5 | 15 | 0.000000000150562 |
| Helianthus annuus | HanXRQChr08 | 3 | CH_han_364 | 3 | 4 | 0.00000407592 |
| Lonicera japonica | GWHAAZE00000006 | 3 | CH_lonja_417 | 3 | 4 | 0.0000785846 |
| Lonicera japonica | GWHAAZE00000006 | 3 | CH_lonja_8 | 14 | 15 | 1.58096e-39 |
| Magnolia biondii | Chr19 | 3 | CH_mbi_21 | 8 | 18 | 6.13491e-19 |
| Magnolia biondii | Chr04 | 3 | CH_mbi_36 | 7 | 11 | 2.64127e-17 |
| Malus domestica | Chr16 | 3 | CH_mdo_335 | 3 | 5 | 0.00000981091 |
| Medicago truncatula | chr1 | 3 | CH_mtr_106 | 5 | 9 | 0.000000000000678407 |
| Quercus lobata | 3 | 3 | CH_qlo_18 | 11 | 14 | 8.51149e-30 |
| Quercus lobata | 12 | 3 | CH_qlo_230 | 5 | 6 | 0.0000000000169822 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_251 | 4 | 8 | 0.000000040675 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_73 | 6 | 7 | 2.94384e-16 |
| Rhododendron simsii | chr09 | 3 | CH_rsi_245 | 3 | 3 | 0.00000103068 |
| Rhododendron simsii | chr03 | 3 | CH_rsi_381 | 3 | 10 | 0.000123486 |
| Salvia bowleyana | GWHASIU00000007 | 3 | CH_sbo_112 | 4 | 6 | 0.000000000296643 |
| Simmondsia chinensis | GWHAASQ00000023 | 3 | CH_sci_272 | 2 | 2 | 0.000851426 |
| Sechium edule | LG11 | 3 | CH_sed_155 | 3 | 9 | 0.0000358775 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_147 | 8 | 19 | 7.57538e-18 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_286 | 5 | 5 | 0.00000000000142152 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_819 | 3 | 3 | 0.00000630447 |
| Trochodendron aralioides | group13 | 3 | CH_tar_101 | 4 | 7 | 0.0000000227279 |
| Trochodendron aralioides | group13 | 3 | CH_tar_69 | 4 | 4 | 0.000000000649895 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 3 | CH_tpr_25 | 5 | 5 | 0.000000000000493114 |
| Tripterygium wilfordii | NC_052244.1 | 3 | CH_twi_325 | 2 | 2 | 0.00083682 |
| Utricularia gibba | unitig_748 | 3 | CH_ugi_26 | 3 | 3 | 0.000000201964 |
| Vigna mungo | CM024074.1 | 3 | CH_vmu_128 | 3 | 5 | 0.00000525878 |
| Vanilla planifolia | CM028152.1 | 3 | CH_vpl_308 | 2 | 2 | 0.000443328 |
| Zea mays | 2 | 3 | CH_zma_167 | 3 | 6 | 0.0000129347 |
| Zea mays | 9 | 3 | CH_zma_51 | 4 | 5 | 0.000000000661645 |
| Anthoceros agrestis | Sc2ySwM_117 | 4 | CH_aag_30 | 4 | 4 | 0.00000000110898 |
| Acer truncatum | chr7 | 4 | CH_acertr_46 | 4 | 4 | 0.0000000000157678 |
| Arabidopsis lyrata | scaffold_3 | 4 | CH_aly_132 | 3 | 5 | 0.00000228668 |
| Avicennia marina | ScioBoG_102831_HRSCAF_103044 | 4 | CH_ama_26 | 3 | 3 | 0.000000624499 |
| Brassica carinata | ChrC09 | 4 | CH_bca_1 | 14 | 38 | 1.6332e-35 |
| Brassica carinata | ChrB03 | 4 | CH_bca_374 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC06 | 4 | CH_bca_746 | 3 | 9 | 0.000313664 |
| Brassica napus | A07 | 4 | CH_bna_196 | 4 | 8 | 0.000000182093 |
| Brassica napus | C01 | 4 | CH_bna_2 | 16 | 44 | 1.17878e-39 |
| Brassica napus | C07 | 4 | CH_bna_516 | 3 | 7 | 0.000239279 |
| Brassica oleracea | C7 | 4 | CH_bol_345 | 3 | 10 | 0.000388495 |
| Brassica oleracea | C1 | 4 | CH_bol_4 | 12 | 30 | 2.48238e-30 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 4 | CH_bvu_44 | 4 | 4 | 0.000000000119188 |
| Camellia sinensis var. sinensis | Chr6 | 4 | CH_camsi_9 | 10 | 13 | 1.81958e-30 |
| Cannabis sativa | NC_044376.1 | 4 | CH_cansat_131 | 3 | 3 | 0.000000362202 |
| Capsicum annuum | PGAv.1.6.scaffold160 | 4 | CH_can_183 | 3 | 3 | 0.000000573281 |
| Corylus avellana | 9 | 4 | CH_cav_23 | 6 | 7 | 8.76406e-17 |
| Coffea canephora | chr11 | 4 | CH_ccan_72 | 4 | 80 | 0.0000000416198 |
| Ceratophyllum demersum | 3 | 4 | CH_cde_43 | 3 | 3 | 0.000000327496 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_161 | 3 | 3 | 0.00000391479 |
| Carpinus fangiana | Cfa06 | 4 | CH_cfa_53 | 5 | 8 | 0.0000000000414592 |
| Cardamine hirsuta | Chr3 | 4 | CH_chi_57 | 4 | 4 | 0.000000000034678 |
| Carya illinoinensis | Chr06 | 4 | CH_cil_18 | 8 | 9 | 4.93491e-24 |
| Cucumis melo | chr10 | 4 | CH_cme_122 | 3 | 4 | 0.00000224265 |
| Carica papaya | supercontig_2 | 4 | CH_cpa_35 | 4 | 8 | 0.00000000631168 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2862 | 4 | CH_cqu_199 | 3 | 3 | 0.000000963157 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3799 | 4 | CH_cqu_200 | 3 | 3 | 0.000000963157 |
| Capsella rubella | scaffold_3 | 4 | CH_cru_324 | 2 | 2 | 0.000731154 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_697 | 3 | 5 | 0.00005853 |
| Eutrema salsugineum | scaffold_12 | 4 | CH_esa_263 | 2 | 2 | 0.000761499 |
| Fragaria x ananassa | Fvb4-1 | 4 | CH_fan_137 | 4 | 8 | 0.0000000981053 |
| Fragaria x ananassa | Fvb4-4 | 4 | CH_fan_344 | 4 | 32 | 0.0000500834 |
| Fragaria x ananassa | Fvb2-1 | 4 | CH_fan_87 | 4 | 4 | 0.00000000140297 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_49 | 5 | 7 | 0.000000000001502 |
| Helianthus annuus | HanXRQChr16 | 4 | CH_han_147 | 5 | 15 | 0.000000000150562 |
| Helianthus annuus | HanXRQChr08 | 4 | CH_han_364 | 3 | 4 | 0.00000407592 |
| Lonicera japonica | GWHAAZE00000006 | 4 | CH_lonja_417 | 3 | 4 | 0.0000785846 |
| Lonicera japonica | GWHAAZE00000006 | 4 | CH_lonja_8 | 14 | 15 | 1.58096e-39 |
| Magnolia biondii | Chr19 | 4 | CH_mbi_21 | 8 | 18 | 6.13491e-19 |
| Magnolia biondii | Chr04 | 4 | CH_mbi_36 | 7 | 11 | 2.64127e-17 |
| Malus domestica | Chr16 | 4 | CH_mdo_335 | 3 | 5 | 0.00000981091 |
| Medicago truncatula | chr1 | 4 | CH_mtr_106 | 5 | 9 | 0.000000000000678407 |
| Quercus lobata | 3 | 4 | CH_qlo_18 | 11 | 14 | 8.51149e-30 |
| Quercus lobata | 12 | 4 | CH_qlo_230 | 5 | 6 | 0.0000000000169822 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_251 | 4 | 8 | 0.000000040675 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_73 | 6 | 7 | 2.94384e-16 |
| Rhododendron simsii | chr09 | 4 | CH_rsi_245 | 3 | 3 | 0.00000103068 |
| Rhododendron simsii | chr03 | 4 | CH_rsi_381 | 3 | 10 | 0.000123486 |
| Salvia bowleyana | GWHASIU00000007 | 4 | CH_sbo_112 | 4 | 6 | 0.000000000296643 |
| Simmondsia chinensis | GWHAASQ00000023 | 4 | CH_sci_272 | 2 | 2 | 0.000851426 |
| Sechium edule | LG11 | 4 | CH_sed_155 | 3 | 9 | 0.0000358775 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_147 | 8 | 19 | 7.57538e-18 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_286 | 5 | 5 | 0.00000000000142152 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_819 | 3 | 3 | 0.00000630447 |
| Trochodendron aralioides | group13 | 4 | CH_tar_101 | 4 | 7 | 0.0000000227279 |
| Trochodendron aralioides | group13 | 4 | CH_tar_69 | 4 | 4 | 0.000000000649895 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 4 | CH_tpr_25 | 5 | 5 | 0.000000000000493114 |
| Tripterygium wilfordii | NC_052244.1 | 4 | CH_twi_325 | 2 | 2 | 0.00083682 |
| Utricularia gibba | unitig_748 | 4 | CH_ugi_26 | 3 | 3 | 0.000000201964 |
| Vigna mungo | CM024074.1 | 4 | CH_vmu_128 | 3 | 5 | 0.00000525878 |
| Vanilla planifolia | CM028152.1 | 4 | CH_vpl_308 | 2 | 2 | 0.000443328 |
| Zea mays | 2 | 4 | CH_zma_167 | 3 | 6 | 0.0000129347 |
| Zea mays | 9 | 4 | CH_zma_51 | 4 | 5 | 0.000000000661645 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |