Functional clusters
Information
- Type Gene Ontology
- Description DNA-directed 5'-3' RNA polymerase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 3 | CH_acertr_164 | 4 | 4 | 0.000000586398 |
| Acer truncatum | chr13 | 3 | CH_acertr_165 | 4 | 4 | 0.000000586398 |
| Acer truncatum | chr3 | 3 | CH_acertr_410 | 3 | 3 | 0.000281948 |
| Actinidia chinensis | Lachesis_group11 | 3 | CH_ach_144 | 3 | 3 | 0.0000978216 |
| Actinidia chinensis | Lachesis_group7 | 3 | CH_ach_145 | 3 | 3 | 0.0000978216 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 3 | CH_amhyb_132 | 3 | 3 | 0.000183833 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 3 | CH_arhy_701 | 3 | 3 | 0.000850663 |
| Brassica oleracea | Boleracea_scaffold_37 | 3 | CH_bol_154 | 4 | 4 | 0.000000699112 |
| Brassica oleracea | Boleracea_scaffold_45 | 3 | CH_bol_188 | 7 | 68 | 0.00000348663 |
| Brassica oleracea | C7 | 3 | CH_bol_189 | 4 | 5 | 0.00000349048 |
| Brassica oleracea | Boleracea_scaffold_44 | 3 | CH_bol_343 | 3 | 3 | 0.000385368 |
| Brassica rapa | Brapa_scaffold_58 | 3 | CH_bra_142 | 4 | 5 | 0.00000909065 |
| Brassica rapa | Brapa_scaffold_140 | 3 | CH_bra_22 | 9 | 23 | 0.000000000000116073 |
| Brassica rapa | Brapa_scaffold_151 | 3 | CH_bra_57 | 6 | 10 | 0.00000000494469 |
| Capsicum annuum | PGAv.1.6.scaffold939 | 3 | CH_can_224 | 4 | 4 | 0.00000452091 |
| Capsicum annuum | PGAv.1.6.scaffold219 | 3 | CH_can_225 | 4 | 4 | 0.00000452091 |
| Citrus clementina | scaffold_9 | 3 | CH_ccl_375 | 3 | 4 | 0.000313382 |
| Carica papaya | supercontig_92 | 3 | CH_cpa_143 | 3 | 4 | 0.0000739669 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1747 | 3 | CH_cqu_463 | 3 | 3 | 0.000422913 |
| Cucumis sativus L. | scaffold18_1 | 3 | CH_csa_112 | 4 | 4 | 0.000000339592 |
| Davidia involucrata | GWHABJS00000005 | 3 | CH_din_256 | 3 | 3 | 0.0000878936 |
| Erythranthe guttata | scaffold_11 | 3 | CH_egut_420 | 3 | 4 | 0.000880548 |
| Fragaria x ananassa | Fvb6-4 | 3 | CH_fan_516 | 3 | 3 | 0.000615343 |
| Hydrangea macrophylla | Hma1.2p1_0094F.1 | 3 | CH_hma_62 | 4 | 4 | 0.00000014791 |
| Lupinus albus | Lalb_Chr24 | 3 | CH_lal_184 | 4 | 4 | 0.00000540289 |
| Lupinus albus | Lalb_Chr06 | 3 | CH_lal_31 | 9 | 14 | 0.0000000000000043828 |
| Lupinus albus | Lalb_Chr07 | 3 | CH_lal_6 | 16 | 30 | 1.01025e-27 |
| Lupinus albus | Lalb_Chr13 | 3 | CH_lal_60 | 6 | 6 | 0.0000000000614431 |
| Lupinus albus | Lalb_Chr09 | 3 | CH_lal_90 | 5 | 5 | 0.0000000182908 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_165 | 6 | 11 | 0.000000000793005 |
| Lonicera japonica | GWHAAZE00000008 | 3 | CH_lonja_327 | 4 | 6 | 0.0000073862 |
| Lonicera japonica | GWHAAZE00000007 | 3 | CH_lonja_474 | 3 | 3 | 0.000257725 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_98 | 11 | 72 | 0.000000000000088521 |
| Malus domestica | Chr02 | 3 | CH_mdo_78 | 8 | 29 | 0.00000000000430816 |
| Nicotiana tabacum | Nitab4.5_0000172 | 3 | CH_nta_126 | 3 | 4 | 0.000515097 |
| Nicotiana tabacum | Nitab4.5_0001761 | 3 | CH_nta_97 | 3 | 3 | 0.000128956 |
| Olea europaea | chr11 | 3 | CH_oeu_245 | 3 | 3 | 0.000169728 |
| Olea europaea | chr17 | 3 | CH_oeu_247 | 5 | 37 | 0.000178883 |
| Prunus persica | Pp01 | 3 | CH_ppe_444 | 3 | 4 | 0.000506214 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_289 | 3 | 3 | 0.000170058 |
| Populus trichocarpa | Chr19 | 3 | CH_ptr_343 | 3 | 3 | 0.000124303 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 3 | CH_rch_25 | 15 | 61 | 3.56977e-24 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_654 | 3 | 3 | 0.000252682 |
| Rhododendron simsii | chr04 | 3 | CH_rsi_469 | 4 | 20 | 0.000430189 |
| Striga asiatica | scaffold119 | 3 | CH_sas_85 | 3 | 3 | 0.000211136 |
| Salix brachista | GWHAAZH00000017 | 3 | CH_sbr_338 | 3 | 4 | 0.000557454 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_1313 | 3 | 3 | 0.000575625 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_1314 | 3 | 3 | 0.000575625 |
| Sequoiadendron giganteum | chr2 | 3 | CH_sgi_1315 | 3 | 3 | 0.000575625 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_453 | 5 | 5 | 0.00000000318056 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_38 | 9 | 14 | 2.5156e-16 |
| Solanum tuberosum | ST4.03ch09 | 3 | CH_stu_426 | 3 | 3 | 0.000115261 |
| Selenicereus undatus | Scaffold_2055 | 3 | CH_sun_173 | 3 | 3 | 0.000285053 |
| Utricularia gibba | unitig_0 | 3 | CH_ugi_90 | 3 | 3 | 0.0000997703 |
| Vanilla planifolia | CM028161.1 | 3 | CH_vpl_227 | 3 | 3 | 0.000101066 |
| Vitis vinifera | chr7 | 3 | CH_vvi_305 | 3 | 3 | 0.000203307 |
| Acer truncatum | chr3 | 4 | CH_acertr_164 | 4 | 4 | 0.000000586398 |
| Acer truncatum | chr13 | 4 | CH_acertr_165 | 4 | 4 | 0.000000586398 |
| Acer truncatum | chr3 | 4 | CH_acertr_410 | 3 | 3 | 0.000281948 |
| Actinidia chinensis | Lachesis_group11 | 4 | CH_ach_144 | 3 | 3 | 0.0000978216 |
| Actinidia chinensis | Lachesis_group7 | 4 | CH_ach_145 | 3 | 3 | 0.0000978216 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 4 | CH_amhyb_132 | 3 | 3 | 0.000183833 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 4 | CH_arhy_701 | 3 | 3 | 0.000850663 |
| Brassica oleracea | Boleracea_scaffold_37 | 4 | CH_bol_154 | 4 | 4 | 0.000000699112 |
| Brassica oleracea | Boleracea_scaffold_45 | 4 | CH_bol_188 | 7 | 68 | 0.00000348663 |
| Brassica oleracea | C7 | 4 | CH_bol_189 | 4 | 5 | 0.00000349048 |
| Brassica oleracea | Boleracea_scaffold_44 | 4 | CH_bol_343 | 3 | 3 | 0.000385368 |
| Brassica rapa | Brapa_scaffold_58 | 4 | CH_bra_142 | 4 | 5 | 0.00000909065 |
| Brassica rapa | Brapa_scaffold_140 | 4 | CH_bra_22 | 9 | 23 | 0.000000000000116073 |
| Brassica rapa | Brapa_scaffold_151 | 4 | CH_bra_57 | 6 | 10 | 0.00000000494469 |
| Capsicum annuum | PGAv.1.6.scaffold939 | 4 | CH_can_224 | 4 | 4 | 0.00000452091 |
| Capsicum annuum | PGAv.1.6.scaffold219 | 4 | CH_can_225 | 4 | 4 | 0.00000452091 |
| Citrus clementina | scaffold_9 | 4 | CH_ccl_375 | 3 | 4 | 0.000313382 |
| Carica papaya | supercontig_92 | 4 | CH_cpa_143 | 3 | 4 | 0.0000739669 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1747 | 4 | CH_cqu_463 | 3 | 3 | 0.000422913 |
| Cucumis sativus L. | scaffold18_1 | 4 | CH_csa_112 | 4 | 4 | 0.000000339592 |
| Davidia involucrata | GWHABJS00000005 | 4 | CH_din_256 | 3 | 3 | 0.0000878936 |
| Erythranthe guttata | scaffold_11 | 4 | CH_egut_420 | 3 | 4 | 0.000880548 |
| Fragaria x ananassa | Fvb6-4 | 4 | CH_fan_516 | 3 | 3 | 0.000615343 |
| Hydrangea macrophylla | Hma1.2p1_0094F.1 | 4 | CH_hma_62 | 4 | 4 | 0.00000014791 |
| Lupinus albus | Lalb_Chr24 | 4 | CH_lal_184 | 4 | 4 | 0.00000540289 |
| Lupinus albus | Lalb_Chr06 | 4 | CH_lal_31 | 9 | 14 | 0.0000000000000043828 |
| Lupinus albus | Lalb_Chr07 | 4 | CH_lal_6 | 16 | 30 | 1.01025e-27 |
| Lupinus albus | Lalb_Chr13 | 4 | CH_lal_60 | 6 | 6 | 0.0000000000614431 |
| Lupinus albus | Lalb_Chr09 | 4 | CH_lal_90 | 5 | 5 | 0.0000000182908 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_165 | 6 | 11 | 0.000000000793005 |
| Lonicera japonica | GWHAAZE00000008 | 4 | CH_lonja_327 | 4 | 6 | 0.0000073862 |
| Lonicera japonica | GWHAAZE00000007 | 4 | CH_lonja_474 | 3 | 3 | 0.000257725 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_98 | 11 | 72 | 0.000000000000088521 |
| Malus domestica | Chr02 | 4 | CH_mdo_78 | 8 | 29 | 0.00000000000430816 |
| Nicotiana tabacum | Nitab4.5_0000172 | 4 | CH_nta_126 | 3 | 4 | 0.000515097 |
| Nicotiana tabacum | Nitab4.5_0001761 | 4 | CH_nta_97 | 3 | 3 | 0.000128956 |
| Olea europaea | chr11 | 4 | CH_oeu_245 | 3 | 3 | 0.000169728 |
| Olea europaea | chr17 | 4 | CH_oeu_247 | 5 | 37 | 0.000178883 |
| Prunus persica | Pp01 | 4 | CH_ppe_444 | 3 | 4 | 0.000506214 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_289 | 3 | 3 | 0.000170058 |
| Populus trichocarpa | Chr19 | 4 | CH_ptr_343 | 3 | 3 | 0.000124303 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 4 | CH_rch_25 | 15 | 61 | 3.56977e-24 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_654 | 3 | 3 | 0.000252682 |
| Rhododendron simsii | chr04 | 4 | CH_rsi_469 | 4 | 20 | 0.000430189 |
| Striga asiatica | scaffold119 | 4 | CH_sas_85 | 3 | 3 | 0.000211136 |
| Salix brachista | GWHAAZH00000017 | 4 | CH_sbr_338 | 3 | 4 | 0.000557454 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_1313 | 3 | 3 | 0.000575625 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_1314 | 3 | 3 | 0.000575625 |
| Sequoiadendron giganteum | chr2 | 4 | CH_sgi_1315 | 3 | 3 | 0.000575625 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_453 | 5 | 5 | 0.00000000318056 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_38 | 9 | 14 | 2.5156e-16 |
| Solanum tuberosum | ST4.03ch09 | 4 | CH_stu_426 | 3 | 3 | 0.000115261 |
| Selenicereus undatus | Scaffold_2055 | 4 | CH_sun_173 | 3 | 3 | 0.000285053 |
| Utricularia gibba | unitig_0 | 4 | CH_ugi_90 | 3 | 3 | 0.0000997703 |
| Vanilla planifolia | CM028161.1 | 4 | CH_vpl_227 | 3 | 3 | 0.000101066 |
| Vitis vinifera | chr7 | 4 | CH_vvi_305 | 3 | 3 | 0.000203307 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0001054 | RNA polymerase I activity | 2 |
| GO:0001055 | RNA polymerase II activity | 8 |
| GO:0003896 | DNA primase activity | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |