Functional clusters
Information
- Type Gene Ontology
- Description poly(A)-specific ribonuclease activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 3 | CH_acertr_93 | 5 | 33 | 0.0000000110251 |
| Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_149 | 3 | 5 | 0.00000548748 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 3 | CH_arhy_182 | 4 | 4 | 0.000000000146519 |
| Amborella trichopoda | AmTr_v1.0_scaffold00070 | 3 | CH_atr_110 | 3 | 3 | 0.000000331332 |
| Brassica carinata | ChrC01 | 3 | CH_bca_371 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC05 | 3 | CH_bca_372 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB03 | 3 | CH_bca_373 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB02 | 3 | CH_bca_446 | 3 | 4 | 0.0000149552 |
| Brassica carinata | ChrB02 | 3 | CH_bca_693 | 3 | 8 | 0.000209162 |
| Brassica rapa | A05 | 3 | CH_bra_105 | 3 | 3 | 0.00000125794 |
| Camellia sinensis var. sinensis | Chr13 | 3 | CH_camsi_124 | 4 | 4 | 0.0000000000607467 |
| Corylus avellana | 1 | 3 | CH_cav_275 | 3 | 7 | 0.0000881497 |
| Carpinus fangiana | Cfa04 | 3 | CH_cfa_88 | 5 | 24 | 0.0000000208725 |
| Cucumis melo | chr06 | 3 | CH_cme_113 | 3 | 3 | 0.000000801094 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_146 | 3 | 3 | 0.00000132315 |
| Durio zibethinus | NW_019168048.1 | 3 | CH_dzi_198 | 3 | 7 | 0.0000410182 |
| Eucalyptus grandis | Chr03 | 3 | CH_egr_661 | 4 | 56 | 0.0000459866 |
| Erythranthe guttata | scaffold_14 | 3 | CH_egut_125 | 4 | 5 | 0.00000000790265 |
| Gossypium hirsutum | D04 | 3 | CH_ghi_397 | 3 | 4 | 0.0000360752 |
| Gossypium raimondii | Chr12 | 3 | CH_gra_192 | 3 | 4 | 0.0000196522 |
| Helianthus annuus | HanXRQChr04 | 3 | CH_han_58 | 8 | 39 | 0.00000000000000280364 |
| Lupinus albus | Lalb_Chr12 | 3 | CH_lal_122 | 4 | 12 | 0.000000292443 |
| Lupinus albus | Lalb_Chr06 | 3 | CH_lal_191 | 3 | 4 | 0.00000751775 |
| Magnolia biondii | Chr15 | 3 | CH_mbi_274 | 3 | 5 | 0.00000123809 |
| Prunus persica | Pp06 | 3 | CH_ppe_302 | 3 | 7 | 0.0000641992 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_13 | 7 | 16 | 6.22109e-17 |
| Phaseolus vulgaris | Chr02 | 3 | CH_pvu_26 | 8 | 9 | 2.58484e-19 |
| Phaseolus vulgaris | Chr04 | 3 | CH_pvu_60 | 5 | 5 | 0.0000000000371434 |
| Phaseolus vulgaris | Chr02 | 3 | CH_pvu_9 | 13 | 16 | 4.34735e-33 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_271 | 4 | 11 | 0.0000000855034 |
| Salix brachista | GWHAAZH00000018 | 3 | CH_sbr_89 | 4 | 4 | 0.000000004493 |
| Sechium edule | LG11 | 3 | CH_sed_122 | 3 | 3 | 0.00000277906 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_151 | 3 | 3 | 0.000000249282 |
| Solanum tuberosum | ST4.03ch01 | 3 | CH_stu_126 | 4 | 4 | 0.000000000199858 |
| Trochodendron aralioides | group18 | 3 | CH_tar_208 | 3 | 3 | 0.0000061637 |
| Trochodendron aralioides | group2 | 3 | CH_tar_36 | 5 | 5 | 0.00000000000151094 |
| Theobroma cacao | Chromosome_6 | 3 | CH_tca_196 | 3 | 4 | 0.00000270296 |
| Zea mays | 2 | 3 | CH_zma_12 | 9 | 22 | 1.45494e-17 |
| Zea mays | 9 | 3 | CH_zma_4 | 13 | 18 | 1.05945e-31 |
| Zea mays | 4 | 3 | CH_zma_55 | 5 | 7 | 0.000000000914422 |
| Acer truncatum | chr8 | 4 | CH_acertr_93 | 5 | 33 | 0.0000000110251 |
| Arabidopsis lyrata | scaffold_5 | 4 | CH_aly_149 | 3 | 5 | 0.00000548748 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 4 | CH_arhy_182 | 4 | 4 | 0.000000000146519 |
| Amborella trichopoda | AmTr_v1.0_scaffold00070 | 4 | CH_atr_110 | 3 | 3 | 0.000000331332 |
| Brassica carinata | ChrC01 | 4 | CH_bca_371 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrC05 | 4 | CH_bca_372 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB03 | 4 | CH_bca_373 | 3 | 3 | 0.00000373973 |
| Brassica carinata | ChrB02 | 4 | CH_bca_446 | 3 | 4 | 0.0000149552 |
| Brassica carinata | ChrB02 | 4 | CH_bca_693 | 3 | 8 | 0.000209162 |
| Brassica rapa | A05 | 4 | CH_bra_105 | 3 | 3 | 0.00000125794 |
| Camellia sinensis var. sinensis | Chr13 | 4 | CH_camsi_124 | 4 | 4 | 0.0000000000607467 |
| Corylus avellana | 1 | 4 | CH_cav_275 | 3 | 7 | 0.0000881497 |
| Carpinus fangiana | Cfa04 | 4 | CH_cfa_88 | 5 | 24 | 0.0000000208725 |
| Cucumis melo | chr06 | 4 | CH_cme_113 | 3 | 3 | 0.000000801094 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_146 | 3 | 3 | 0.00000132315 |
| Durio zibethinus | NW_019168048.1 | 4 | CH_dzi_198 | 3 | 7 | 0.0000410182 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_661 | 4 | 56 | 0.0000459866 |
| Erythranthe guttata | scaffold_14 | 4 | CH_egut_125 | 4 | 5 | 0.00000000790265 |
| Gossypium hirsutum | D04 | 4 | CH_ghi_397 | 3 | 4 | 0.0000360752 |
| Gossypium raimondii | Chr12 | 4 | CH_gra_192 | 3 | 4 | 0.0000196522 |
| Helianthus annuus | HanXRQChr04 | 4 | CH_han_58 | 8 | 39 | 0.00000000000000280364 |
| Lupinus albus | Lalb_Chr12 | 4 | CH_lal_122 | 4 | 12 | 0.000000292443 |
| Lupinus albus | Lalb_Chr06 | 4 | CH_lal_191 | 3 | 4 | 0.00000751775 |
| Magnolia biondii | Chr15 | 4 | CH_mbi_274 | 3 | 5 | 0.00000123809 |
| Prunus persica | Pp06 | 4 | CH_ppe_302 | 3 | 7 | 0.0000641992 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_13 | 7 | 16 | 6.22109e-17 |
| Phaseolus vulgaris | Chr02 | 4 | CH_pvu_26 | 8 | 9 | 2.58484e-19 |
| Phaseolus vulgaris | Chr04 | 4 | CH_pvu_60 | 5 | 5 | 0.0000000000371434 |
| Phaseolus vulgaris | Chr02 | 4 | CH_pvu_9 | 13 | 16 | 4.34735e-33 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_271 | 4 | 11 | 0.0000000855034 |
| Salix brachista | GWHAAZH00000018 | 4 | CH_sbr_89 | 4 | 4 | 0.000000004493 |
| Sechium edule | LG11 | 4 | CH_sed_122 | 3 | 3 | 0.00000277906 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_151 | 3 | 3 | 0.000000249282 |
| Solanum tuberosum | ST4.03ch01 | 4 | CH_stu_126 | 4 | 4 | 0.000000000199858 |
| Trochodendron aralioides | group18 | 4 | CH_tar_208 | 3 | 3 | 0.0000061637 |
| Trochodendron aralioides | group2 | 4 | CH_tar_36 | 5 | 5 | 0.00000000000151094 |
| Theobroma cacao | Chromosome_6 | 4 | CH_tca_196 | 3 | 4 | 0.00000270296 |
| Zea mays | 2 | 4 | CH_zma_12 | 9 | 22 | 1.45494e-17 |
| Zea mays | 9 | 4 | CH_zma_4 | 13 | 18 | 1.05945e-31 |
| Zea mays | 4 | 4 | CH_zma_55 | 5 | 7 | 0.000000000914422 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |