Functional clusters
Information
- Type Gene Ontology
- Description DNA topoisomerase type I (single strand cut, ATP-independent) activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 3 | CH_aar_267 | 2 | 2 | 0.000912326 |
| Arabidopsis lyrata | scaffold_8 | 3 | CH_aly_329 | 2 | 2 | 0.000660044 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 3 | CH_atr_331 | 2 | 2 | 0.000794407 |
| Corylus avellana | 3 | 3 | CH_cav_122 | 3 | 3 | 0.000000308618 |
| Chara braunii | BFEA01000238 | 3 | CH_cbr_91 | 3 | 11 | 0.0000447653 |
| Citrus clementina | scaffold_9 | 3 | CH_ccl_183 | 3 | 3 | 0.000000201881 |
| Eutrema salsugineum | scaffold_2 | 3 | CH_esa_271 | 2 | 2 | 0.000761499 |
| Fragaria x ananassa | Fvb6-2 | 3 | CH_fan_270 | 3 | 5 | 0.00000909281 |
| Hydrangea macrophylla | Hma1.2p1_0023F.1 | 3 | CH_hma_284 | 2 | 4 | 0.000666445 |
| Medicago truncatula | chr3 | 3 | CH_mtr_296 | 4 | 15 | 0.000000140363 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_383 | 2 | 2 | 0.000782452 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_403 | 3 | 5 | 0.00000524297 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_586 | 3 | 3 | 0.0000000711967 |
| Solanum lycopersicum | SL4.0ch05 | 3 | CH_sly_85 | 4 | 4 | 0.0000000000212329 |
| Selaginella moellendorffii | scaffold_62 | 3 | CH_smo_59 | 3 | 3 | 0.00000374023 |
| Schrenkiella parvula | ch6-6 | 3 | CH_spa_54 | 3 | 3 | 0.000000325462 |
| Solanum tuberosum | ST4.03ch05 | 3 | CH_stu_578 | 2 | 2 | 0.000512453 |
| Vigna mungo | CM024069.1 | 3 | CH_vmu_86 | 3 | 3 | 0.000000125253 |
| Vanilla planifolia | CM028151.1 | 3 | CH_vpl_76 | 3 | 3 | 0.0000000818945 |
| Aethionema arabicum | LG-2 | 4 | CH_aar_267 | 2 | 2 | 0.000912326 |
| Arabidopsis lyrata | scaffold_8 | 4 | CH_aly_329 | 2 | 2 | 0.000660044 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 4 | CH_atr_331 | 2 | 2 | 0.000794407 |
| Corylus avellana | 3 | 4 | CH_cav_122 | 3 | 3 | 0.000000308618 |
| Chara braunii | BFEA01000238 | 4 | CH_cbr_91 | 3 | 11 | 0.0000447653 |
| Citrus clementina | scaffold_9 | 4 | CH_ccl_183 | 3 | 3 | 0.000000201881 |
| Eutrema salsugineum | scaffold_2 | 4 | CH_esa_271 | 2 | 2 | 0.000761499 |
| Fragaria x ananassa | Fvb6-2 | 4 | CH_fan_270 | 3 | 5 | 0.00000909281 |
| Hydrangea macrophylla | Hma1.2p1_0023F.1 | 4 | CH_hma_284 | 2 | 4 | 0.000666445 |
| Medicago truncatula | chr3 | 4 | CH_mtr_296 | 4 | 15 | 0.000000140363 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_383 | 2 | 2 | 0.000782452 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_403 | 3 | 5 | 0.00000524297 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_586 | 3 | 3 | 0.0000000711967 |
| Solanum lycopersicum | SL4.0ch05 | 4 | CH_sly_85 | 4 | 4 | 0.0000000000212329 |
| Selaginella moellendorffii | scaffold_62 | 4 | CH_smo_59 | 3 | 3 | 0.00000374023 |
| Schrenkiella parvula | ch6-6 | 4 | CH_spa_54 | 3 | 3 | 0.000000325462 |
| Solanum tuberosum | ST4.03ch05 | 4 | CH_stu_578 | 2 | 2 | 0.000512453 |
| Vigna mungo | CM024069.1 | 4 | CH_vmu_86 | 3 | 3 | 0.000000125253 |
| Vanilla planifolia | CM028151.1 | 4 | CH_vpl_76 | 3 | 3 | 0.0000000818945 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |