Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.post-Golgi trafficking.vesicle tethering

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Quercus lobata 10 1 CH_qlo_720 4 6 0.0000815083
Quercus lobata 6 1 CH_qlo_985 7 80 0.000530201
Quercus lobata 10 2 CH_qlo_720 4 6 0.0000815083
Quercus lobata 6 2 CH_qlo_985 7 80 0.000530201

Available child term results

Ontology identifier Description Number of clusters
22.3.4.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities 2
22.3.4.1.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.A-class RAB GTPase 2
22.3.4.1.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.B-class RAB GTPase 13
22.3.4.1.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.C-class RAB GTPase 2
22.3.4.1.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.E-class RAB GTPase 4
22.3.4.1.7 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.G-class RAB GTPase 4
22.3.4.1.8 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activities.H-class RAB GTPase 10
22.3.4.10.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (GRIP) 12
22.3.4.10.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (CASP) 8
22.3.4.10.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (GC1) 16
22.3.4.10.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (GC2) 12
22.3.4.10.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (GC3/GC4) 6
22.3.4.10.7 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.Golgin-mediated tethering.golgin (GC6) 9
22.3.4.2.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase activation.RAB-GTPase-activating protein (RAB-GAP) 6
22.3.4.3.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase guanyl-nucleotide exchange.RAB-H1 GTPase nucleotide exchange factor (LOT) 14
22.3.4.4.1.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.subunit alpha 10
22.3.4.4.1.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.subunit beta 7
22.3.4.4.1.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase geranylgeranyltransferase (RGT) complex.accessory subunit 6
22.3.4.4.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GTPase GDP-dissociation inhibitor (RAB-GDI) 12
22.3.4.4.3.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GDI displacement factor (GDF) activities.A-class Rab-GDF protein 15
22.3.4.4.3.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GDI displacement factor (GDF) activities.B-G-class Rab-GDF protein 12
22.3.4.4.3.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB-GTPase membrane association.RAB-GDI displacement factor (GDF) activities.H-class Rab-GDF protein 4
22.3.4.5.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.RAB5 nucleotide exchange factor (VPS9) 21
22.3.4.5.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.RAB5 canonical effector (EREX) 6
22.3.4.5.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.RAB5 plant-specific effector (PUF2) 2
22.3.4.5.5.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.MON1-CCZ1 RAB7 nucleotide exchange factor complex.component MON1/SAND 12
22.3.4.5.5.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.MON1-CCZ1 RAB7 nucleotide exchange factor complex.component CCZ1 2
22.3.4.6.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-II complex-specific components.component TRS120/VAN4 13
22.3.4.6.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-II complex-specific components.component TRS130/CLUB 13
22.3.4.6.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-II complex-specific components.component TRAPPC2L 2
22.3.4.6.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-II complex-specific components.component TRAPPC13 8
22.3.4.7.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-III-complex-specific components.component TRAPPC8/TRS85 16
22.3.4.7.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-III-complex-specific components.component TRAPPC11 4
22.3.4.7.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.TRAPP-III-complex-specific components.component TRAPPC12 2
22.3.4.8.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.component VPS51/UNH 14
22.3.4.8.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.component VPS52/POK 20
22.3.4.8.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.component VPS53/HIT1 14
22.3.4.8.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.GARP-specific component VPS54 24
22.3.4.8.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.EARP-specific component Syndetin-like 23
22.3.4.9.1 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS11 2
22.3.4.9.2 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS16/VCL1 12
22.3.4.9.3 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS18 23
22.3.4.9.4 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.component VPS33 20
22.3.4.9.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.HOPS-specific component VPS39 18
22.3.4.9.6 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.HOPS-specific component VPS41/VAM2 10
22.3.4.9.7 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.CORVET-specific component VPS3 12
22.3.4.9.8 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.CORVET-specific component VPS8 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001