Functional clusters
Information
- Type MapMan
- Description Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.GARP-specific component VPS54
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group7 | 1 | CH_ach_137 | 2 | 2 | 0.000162964 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 1 | CH_arhy_214 | 3 | 3 | 0.0000000752906 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 1 | CH_arhy_215 | 3 | 3 | 0.0000000752906 |
| Camellia sinensis var. sinensis | Contig1196 | 1 | CH_camsi_242 | 3 | 4 | 0.0000000504629 |
| Corylus avellana | 2 | 1 | CH_cav_254 | 2 | 2 | 0.0000766695 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_378 | 2 | 2 | 0.0000598874 |
| Manihot esculenta | Chromosome03 | 1 | CH_mes_288 | 2 | 2 | 0.0000610631 |
| Salix brachista | GWHAAZH00000016 | 1 | CH_sbr_194 | 3 | 18 | 0.0000194254 |
| Sechium edule | LG14 | 1 | CH_sed_287 | 2 | 4 | 0.000428021 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_854 | 2 | 2 | 0.0000487151 |
| Sapria himalayana | scaffold71_2458239 | 1 | CH_shi_4 | 5 | 6 | 4.81132e-16 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_422 | 2 | 2 | 0.000929238 |
| Actinidia chinensis | Lachesis_group7 | 2 | CH_ach_137 | 2 | 2 | 0.000162964 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 2 | CH_arhy_214 | 3 | 3 | 0.0000000752906 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 2 | CH_arhy_215 | 3 | 3 | 0.0000000752906 |
| Camellia sinensis var. sinensis | Contig1196 | 2 | CH_camsi_242 | 3 | 4 | 0.0000000504629 |
| Corylus avellana | 2 | 2 | CH_cav_254 | 2 | 2 | 0.0000766695 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_378 | 2 | 2 | 0.0000598874 |
| Manihot esculenta | Chromosome03 | 2 | CH_mes_288 | 2 | 2 | 0.0000610631 |
| Salix brachista | GWHAAZH00000016 | 2 | CH_sbr_194 | 3 | 18 | 0.0000194254 |
| Sechium edule | LG14 | 2 | CH_sed_287 | 2 | 4 | 0.000428021 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_854 | 2 | 2 | 0.0000487151 |
| Sapria himalayana | scaffold71_2458239 | 2 | CH_shi_4 | 5 | 6 | 4.81132e-16 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_422 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |