Functional clusters

Information

  • Type MapMan
  • Description Vesicle trafficking.post-Golgi trafficking.vesicle tethering.RAB5-RAB7-dependent pathway.RAB5 nucleotide exchange factor (VPS9)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_448 3 37 0.000231216
Amborella trichopoda AmTr_v1.0_scaffold00099 1 CH_atr_292 2 2 0.000476644
Brassica carinata ChrB08 1 CH_bca_1056 2 3 0.000641272
Brassica napus C05 1 CH_bna_337 3 16 0.00000577964
Camellia sinensis var. sinensis Chr6 1 CH_camsi_651 2 2 0.000137564
Corylus avellana 1 1 CH_cav_353 2 2 0.000230008
Populus trichocarpa Chr13 1 CH_ptr_436 2 2 0.000346801
Sequoiadendron giganteum chr2 1 CH_sgi_402 3 3 0.00000000355983
Sapria himalayana scaffold29_7503565 1 CH_shi_214 2 5 0.000571755
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_323 2 2 0.000278772
Vitis vinifera chr18 1 CH_vvi_339 2 2 0.000228189
Acer truncatum chr13 2 CH_acertr_448 3 37 0.000231216
Amborella trichopoda AmTr_v1.0_scaffold00099 2 CH_atr_292 2 2 0.000476644
Brassica carinata ChrB08 2 CH_bca_1056 2 3 0.000641272
Camellia sinensis var. sinensis Chr6 2 CH_camsi_651 2 2 0.000137564
Corylus avellana 1 2 CH_cav_353 2 2 0.000230008
Populus trichocarpa Chr13 2 CH_ptr_436 2 2 0.000346801
Sequoiadendron giganteum chr2 2 CH_sgi_402 3 3 0.00000000355983
Sapria himalayana scaffold29_7503565 2 CH_shi_214 2 5 0.000571755
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_323 2 2 0.000278772
Vitis vinifera chr18 2 CH_vvi_339 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001