Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of cellular metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG05 3 CH_aco_121 19 53 0.000493725
Dioscorea dumetorum contig546 3 CH_ddu_279 17 42 0.000967335
Ananas comosus LG05 4 CH_aco_121 19 53 0.000493725
Dioscorea dumetorum contig546 4 CH_ddu_279 17 42 0.000967335

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 20
GO:0000122 negative regulation of transcription by RNA polymerase II 8
GO:0000183 rDNA heterochromatin assembly 2
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 2
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 2
GO:0006275 regulation of DNA replication 2
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006355 regulation of transcription, DNA-templated 18
GO:0006357 regulation of transcription by RNA polymerase II 34
GO:0006417 regulation of translation 4
GO:0010116 positive regulation of abscisic acid biosynthetic process 8
GO:0010271 regulation of chlorophyll catabolic process 2
GO:0010323 negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 2
GO:0010337 regulation of salicylic acid metabolic process 10
GO:0010364 regulation of ethylene biosynthetic process 2
GO:0010365 positive regulation of ethylene biosynthetic process 4
GO:0010371 regulation of gibberellin biosynthetic process 8
GO:0010373 negative regulation of gibberellin biosynthetic process 2
GO:0010422 regulation of brassinosteroid biosynthetic process 12
GO:0010423 negative regulation of brassinosteroid biosynthetic process 2
GO:0010466 negative regulation of peptidase activity 10
GO:0010506 regulation of autophagy 4
GO:0010507 negative regulation of autophagy 2
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010565 regulation of cellular ketone metabolic process 2
GO:0010569 regulation of double-strand break repair via homologous recombination 30
GO:0010581 regulation of starch biosynthetic process 4
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010726 positive regulation of hydrogen peroxide metabolic process 12
GO:0010728 regulation of hydrogen peroxide biosynthetic process 2
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process 6
GO:0010896 regulation of triglyceride catabolic process 4
GO:0010906 regulation of glucose metabolic process 16
GO:0010922 positive regulation of phosphatase activity 14
GO:0010951 negative regulation of endopeptidase activity 6
GO:0016480 negative regulation of transcription by RNA polymerase III 4
GO:0019219 regulation of nucleobase-containing compound metabolic process 2
GO:0030174 regulation of DNA-dependent DNA replication initiation 2
GO:0031063 regulation of histone deacetylation 4
GO:0031327 negative regulation of cellular biosynthetic process 2
GO:0031328 positive regulation of cellular biosynthetic process 2
GO:0031440 regulation of mRNA 3'-end processing 2
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032000 positive regulation of fatty acid beta-oxidation 2
GO:0032055 negative regulation of translation in response to stress 2
GO:0032147 activation of protein kinase activity 4
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032268 regulation of cellular protein metabolic process 4
GO:0032784 regulation of DNA-templated transcription, elongation 12
GO:0032875 regulation of DNA endoreduplication 4
GO:0032877 positive regulation of DNA endoreduplication 10
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 12
GO:0033120 positive regulation of RNA splicing 2
GO:0033234 negative regulation of protein sumoylation 2
GO:0033674 positive regulation of kinase activity 2
GO:0034248 regulation of cellular amide metabolic process 2
GO:0034263 positive regulation of autophagy in response to ER overload 6
GO:0035278 miRNA mediated inhibition of translation 60
GO:0042549 photosystem II stabilization 4
GO:0043407 negative regulation of MAP kinase activity 4
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043457 regulation of cellular respiration 18
GO:0043488 regulation of mRNA stability 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 2
GO:0043666 regulation of phosphoprotein phosphatase activity 2
GO:0044030 regulation of DNA methylation 2
GO:0045014 carbon catabolite repression of transcription by glucose 4
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045717 negative regulation of fatty acid biosynthetic process 2
GO:0045723 positive regulation of fatty acid biosynthetic process 16
GO:0045727 positive regulation of translation 6
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity 2
GO:0045739 positive regulation of DNA repair 2
GO:0045828 positive regulation of isoprenoid metabolic process 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 8
GO:0045901 positive regulation of translational elongation 2
GO:0045910 negative regulation of DNA recombination 24
GO:0045944 positive regulation of transcription by RNA polymerase II 14
GO:0045951 positive regulation of mitotic recombination 2
GO:0048255 mRNA stabilization 2
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051571 positive regulation of histone H3-K4 methylation 4
GO:0051573 negative regulation of histone H3-K9 methylation 6
GO:0051973 positive regulation of telomerase activity 18
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 2
GO:0070455 positive regulation of heme biosynthetic process 8
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 10
GO:0072344 rescue of stalled ribosome 16
GO:0080142 regulation of salicylic acid biosynthetic process 6
GO:0080163 regulation of protein serine/threonine phosphatase activity 4
GO:0090065 regulation of production of siRNA involved in RNA interference 2
GO:0090153 regulation of sphingolipid biosynthetic process 4
GO:0090356 negative regulation of auxin metabolic process 2
GO:0090358 positive regulation of tryptophan metabolic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 10
GO:0097167 circadian regulation of translation 2
GO:1900030 regulation of pectin biosynthetic process 4
GO:1900088 regulation of inositol biosynthetic process 2
GO:1900109 regulation of histone H3-K9 dimethylation 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900364 negative regulation of mRNA polyadenylation 8
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 2
GO:1900706 positive regulation of siderophore biosynthetic process 26
GO:1901183 positive regulation of camalexin biosynthetic process 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901430 positive regulation of syringal lignin biosynthetic process 8
GO:1901535 regulation of DNA demethylation 2
GO:1901799 negative regulation of proteasomal protein catabolic process 6
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 6
GO:1902006 negative regulation of proline biosynthetic process 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902916 positive regulation of protein polyubiquitination 2
GO:1903311 regulation of mRNA metabolic process 4
GO:1903426 regulation of reactive oxygen species biosynthetic process 2
GO:1903427 negative regulation of reactive oxygen species biosynthetic process 18
GO:1903647 negative regulation of chlorophyll catabolic process 6
GO:1903730 regulation of phosphatidate phosphatase activity 2
GO:1904143 positive regulation of carotenoid biosynthetic process 2
GO:1904292 regulation of ERAD pathway 4
GO:1904294 positive regulation of ERAD pathway 8
GO:1904667 negative regulation of ubiquitin protein ligase activity 2
GO:1904668 positive regulation of ubiquitin protein ligase activity 14
GO:1904964 positive regulation of phytol biosynthetic process 2
GO:1905038 regulation of membrane lipid metabolic process 2
GO:1905157 positive regulation of photosynthesis 2
GO:1905168 positive regulation of double-strand break repair via homologous recombination 2
GO:2000013 regulation of arginine biosynthetic process via ornithine 2
GO:2000029 regulation of proanthocyanidin biosynthetic process 6
GO:2000042 negative regulation of double-strand break repair via homologous recombination 6
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 4
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 14
GO:2000117 negative regulation of cysteine-type endopeptidase activity 16
GO:2000143 negative regulation of DNA-templated transcription, initiation 2
GO:2000232 regulation of rRNA processing 4
GO:2000234 positive regulation of rRNA processing 6
GO:2000541 positive regulation of protein geranylgeranylation 4
GO:2000653 regulation of genetic imprinting 2
GO:2000762 regulation of phenylpropanoid metabolic process 8
GO:2000786 positive regulation of autophagosome assembly 2
GO:2000904 regulation of starch metabolic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 4
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 2
GO:2001253 regulation of histone H3-K36 trimethylation 2
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001