Functional clusters

Information

  • Type Gene Ontology
  • Description intracellular membrane-bounded organelle

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_204 29 43 0.000000131481
Arabidopsis thaliana Chr1 3 CH_ath_329 27 41 0.0000101665
Arabidopsis thaliana Chr4 3 CH_ath_449 24 36 0.0000739618
Arabidopsis thaliana Chr5 3 CH_ath_509 28 47 0.000138309
Arabidopsis thaliana Chr1 3 CH_ath_564 28 48 0.000269568
Brachypodium distachyon Bd1 3 CH_bdi_258 24 48 0.000310344
Magnolia biondii Chr02 3 CH_mbi_170 30 66 0.0000000324218
Oryza sativa ssp. indica Chr3 3 CH_osaindica_221 30 77 0.0000245308
Arabidopsis thaliana Chr5 4 CH_ath_204 29 43 0.000000131481
Arabidopsis thaliana Chr1 4 CH_ath_329 27 41 0.0000101665
Arabidopsis thaliana Chr4 4 CH_ath_449 24 36 0.0000739618
Arabidopsis thaliana Chr5 4 CH_ath_509 28 47 0.000138309
Arabidopsis thaliana Chr1 4 CH_ath_564 28 48 0.000269568
Brachypodium distachyon Bd1 4 CH_bdi_258 24 48 0.000310344
Magnolia biondii Chr02 4 CH_mbi_170 30 66 0.0000000324218
Oryza sativa ssp. indica Chr3 4 CH_osaindica_221 30 77 0.0000245308

Available child term results

Ontology identifier Description Number of clusters
GO:0000112 nucleotide-excision repair factor 3 complex 2
GO:0000118 histone deacetylase complex 2
GO:0000124 SAGA complex 2
GO:0000137 Golgi cis cisterna 12
GO:0000139 Golgi membrane 2
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 10
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 2
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 8
GO:0000311 plastid large ribosomal subunit 12
GO:0000312 plastid small ribosomal subunit 6
GO:0000325 plant-type vacuole 20
GO:0000326 protein storage vacuole 58
GO:0000327 lytic vacuole within protein storage vacuole 6
GO:0000418 RNA polymerase IV complex 18
GO:0000419 RNA polymerase V complex 2
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0000439 transcription factor TFIIH core complex 10
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 2
GO:0000795 synaptonemal complex 2
GO:0000802 transverse filament 4
GO:0000811 GINS complex 2
GO:0000814 ESCRT II complex 12
GO:0000938 GARP complex 14
GO:0001401 SAM complex 2
GO:0001673 male germ cell nucleus 2
GO:0005634 nucleus 28
GO:0005635 nuclear envelope 2
GO:0005637 nuclear inner membrane 2
GO:0005639 integral component of nuclear inner membrane 10
GO:0005640 nuclear outer membrane 2
GO:0005643 nuclear pore 10
GO:0005652 nuclear lamina 2
GO:0005654 nucleoplasm 2
GO:0005655 nucleolar ribonuclease P complex 10
GO:0005662 DNA replication factor A complex 2
GO:0005664 nuclear origin of replication recognition complex 6
GO:0005665 RNA polymerase II, core complex 6
GO:0005666 RNA polymerase III complex 6
GO:0005669 transcription factor TFIID complex 4
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 14
GO:0005677 chromatin silencing complex 2
GO:0005680 anaphase-promoting complex 12
GO:0005681 spliceosomal complex 6
GO:0005689 U12-type spliceosomal complex 6
GO:0005712 chiasma 2
GO:0005730 nucleolus 12
GO:0005736 RNA polymerase I complex 2
GO:0005739 mitochondrion 22
GO:0005741 mitochondrial outer membrane 2
GO:0005742 mitochondrial outer membrane translocase complex 2
GO:0005743 mitochondrial inner membrane 4
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 22
GO:0005746 mitochondrial respirasome 2
GO:0005747 mitochondrial respiratory chain complex I 4
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 4
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core 4
GO:0005758 mitochondrial intermembrane space 24
GO:0005759 mitochondrial matrix 32
GO:0005762 mitochondrial large ribosomal subunit 2
GO:0005763 mitochondrial small ribosomal subunit 6
GO:0005764 lysosome 4
GO:0005768 endosome 2
GO:0005769 early endosome 2
GO:0005773 vacuole 2
GO:0005774 vacuolar membrane 24
GO:0005775 vacuolar lumen 4
GO:0005777 peroxisome 22
GO:0005782 peroxisomal matrix 4
GO:0005783 endoplasmic reticulum 22
GO:0005784 Sec61 translocon complex 6
GO:0005785 signal recognition particle receptor complex 2
GO:0005787 signal peptidase complex 8
GO:0005789 endoplasmic reticulum membrane 2
GO:0005794 Golgi apparatus 10
GO:0005797 Golgi medial cisterna 10
GO:0005801 cis-Golgi network 4
GO:0005802 trans-Golgi network 6
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex 14
GO:0005848 mRNA cleavage stimulating factor complex 6
GO:0005849 mRNA cleavage factor complex 2
GO:0005880 nuclear microtubule 6
GO:0008250 oligosaccharyltransferase complex 2
GO:0008622 epsilon DNA polymerase complex 30
GO:0009503 thylakoid light-harvesting complex 4
GO:0009507 chloroplast 44
GO:0009508 plastid chromosome 4
GO:0009509 chromoplast 2
GO:0009511 plasmodesmatal endoplasmic reticulum 2
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009526 plastid envelope 6
GO:0009532 plastid stroma 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 6
GO:0009536 plastid 22
GO:0009544 chloroplast ATP synthase complex 4
GO:0009547 plastid ribosome 80
GO:0009570 chloroplast stroma 2
GO:0009578 etioplast stroma 2
GO:0009705 plant-type vacuole membrane 2
GO:0009706 chloroplast inner membrane 6
GO:0009923 fatty acid elongase complex 54
GO:0009941 chloroplast envelope 10
GO:0010006 Toc complex 2
GO:0010007 magnesium chelatase complex 2
GO:0010008 endosome membrane 4
GO:0010168 ER body 12
GO:0010240 plastid pyruvate dehydrogenase complex 6
GO:0010282 senescence-associated vacuole 14
GO:0010287 plastoglobule 8
GO:0015030 Cajal body 4
GO:0016363 nuclear matrix 4
GO:0016471 vacuolar proton-transporting V-type ATPase complex 2
GO:0016514 SWI/SNF complex 4
GO:0016587 Isw1 complex 4
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016592 mediator complex 14
GO:0016593 Cdc73/Paf1 complex 4
GO:0016602 CCAAT-binding factor complex 60
GO:0016604 nuclear body 2
GO:0016607 nuclear speck 4
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0017119 Golgi transport complex 10
GO:0030093 chloroplast photosystem I 4
GO:0030121 AP-1 adaptor complex 2
GO:0030122 AP-2 adaptor complex 2
GO:0030126 COPI vesicle coat 12
GO:0030127 COPII vesicle coat 4
GO:0030134 COPII-coated ER to Golgi transport vesicle 2
GO:0030176 integral component of endoplasmic reticulum membrane 2
GO:0030663 COPI-coated vesicle membrane 2
GO:0030870 Mre11 complex 2
GO:0030875 rDNA protrusion 2
GO:0030896 checkpoint clamp complex 2
GO:0031011 Ino80 complex 2
GO:0031080 nuclear pore outer ring 2
GO:0031213 RSF complex 12
GO:0031303 integral component of endosome membrane 4
GO:0031304 intrinsic component of mitochondrial inner membrane 2
GO:0031307 integral component of mitochondrial outer membrane 4
GO:0031313 extrinsic component of endosome membrane 4
GO:0031314 extrinsic component of mitochondrial inner membrane 2
GO:0031357 integral component of chloroplast inner membrane 8
GO:0031380 nuclear RNA-directed RNA polymerase complex 2
GO:0031410 cytoplasmic vesicle 4
GO:0031897 Tic complex 14
GO:0031966 mitochondrial membrane 6
GO:0031976 plastid thylakoid 2
GO:0031985 Golgi cisterna 2
GO:0032039 integrator complex 16
GO:0032578 aleurone grain membrane 8
GO:0032586 protein storage vacuole membrane 2
GO:0032592 integral component of mitochondrial membrane 2
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 10
GO:0032783 super elongation complex 8
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex 6
GO:0033095 aleurone grain 2
GO:0033597 mitotic checkpoint complex 4
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 6
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 2
GO:0034457 Mpp10 complex 12
GO:0034693 U11/U12 snRNP 2
GO:0034998 oligosaccharyltransferase I complex 2
GO:0035060 brahma complex 2
GO:0035061 interchromatin granule 2
GO:0035101 FACT complex 26
GO:0035102 PRC1 complex 2
GO:0035145 exon-exon junction complex 6
GO:0035267 NuA4 histone acetyltransferase complex 6
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0035658 Mon1-Ccz1 complex 6
GO:0042644 chloroplast nucleoid 4
GO:0042720 mitochondrial inner membrane peptidase complex 12
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 4
GO:0042729 DASH complex 2
GO:0042735 protein body 22
GO:0042765 GPI-anchor transamidase complex 2
GO:0042807 central vacuole 4
GO:0043078 polar nucleus 48
GO:0043240 Fanconi anaemia nuclear complex 2
GO:0043253 chloroplast ribosome 2
GO:0043529 GET complex 2
GO:0043564 Ku70:Ku80 complex 10
GO:0043625 delta DNA polymerase complex 4
GO:0044611 nuclear pore inner ring 4
GO:0044614 nuclear pore cytoplasmic filaments 2
GO:0045025 mitochondrial degradosome 2
GO:0045334 clathrin-coated endocytic vesicle 2
GO:0046540 U4/U6 x U5 tri-snRNP complex 2
GO:0046861 glyoxysomal membrane 2
GO:0048188 Set1C/COMPASS complex 8
GO:0048353 primary endosperm nucleus 2
GO:0048555 generative cell nucleus 8
GO:0048556 microsporocyte nucleus 4
GO:0055029 nuclear DNA-directed RNA polymerase complex 2
GO:0061927 TOC-TIC supercomplex I 2
GO:0070209 ASTRA complex 2
GO:0070382 exocytic vesicle 2
GO:0070449 elongin complex 4
GO:0070461 SAGA-type complex 4
GO:0070531 BRCA1-A complex 4
GO:0070545 PeBoW complex 2
GO:0070772 PAS complex 2
GO:0071006 U2-type catalytic step 1 spliceosome 2
GO:0071013 catalytic step 2 spliceosome 6
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 4
GO:0071781 endoplasmic reticulum cisternal network 4
GO:0072546 EMC complex 6
GO:0089701 U2AF complex 10
GO:0098791 Golgi apparatus subcompartment 2
GO:0098798 mitochondrial protein-containing complex 88
GO:0098800 inner mitochondrial membrane protein complex 20
GO:0099086 synaptonemal structure 4
GO:0099503 secretory vesicle 40
GO:0140513 nuclear protein-containing complex 4
GO:1990071 TRAPPII protein complex 14
GO:1990578 perinuclear endoplasmic reticulum membrane 16
GO:1990745 EARP complex 8
GO:1990879 CST complex 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001