Functional clusters
Information
- Type Gene Ontology
- Description polar nucleus
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brachypodium distachyon | Bd2 | 3 | CH_bdi_166 | 3 | 4 | 0.0000260015 |
| Brachypodium distachyon | Bd3 | 3 | CH_bdi_289 | 3 | 9 | 0.000544874 |
| Ceratophyllum demersum | 3 | 3 | CH_cde_76 | 3 | 3 | 0.00000906696 |
| Eragrostis curvula | Contig25 | 3 | CH_ecu_215 | 4 | 4 | 0.000000000416192 |
| Eragrostis curvula | Contig25 | 3 | CH_ecu_677 | 4 | 53 | 0.000120558 |
| Hordeum vulgare | chr6H | 3 | CH_hvu_27 | 7 | 19 | 0.00000000000000137062 |
| Miscanthus sinensis | Chr09 | 3 | CH_msi_40 | 6 | 8 | 0.00000000000000220033 |
| Miscanthus sinensis | Chr06 | 3 | CH_msi_403 | 3 | 8 | 0.000154037 |
| Oryza alta | GWHAZTO00000008 | 3 | CH_oal_565 | 3 | 12 | 0.000152577 |
| Oryza brachyantha | 8 | 3 | CH_obr_223 | 3 | 12 | 0.0000987646 |
| Oryza sativa ssp. indica | Chr8 | 3 | CH_osaindica_232 | 3 | 12 | 0.0000307973 |
| Oryza sativa Kitaake | Chr4 | 3 | CH_osak_211 | 3 | 3 | 0.00000135914 |
| Oryza sativa Kitaake | Chr8 | 3 | CH_osak_418 | 3 | 14 | 0.000493428 |
| Oryza sativa ssp. japonica | chr08 | 3 | CH_osa_317 | 3 | 19 | 0.000141654 |
| Sorghum bicolor | Chr05 | 3 | CH_sbi_13 | 8 | 9 | 5.1277e-22 |
| Secale cereale | GWHASIY00000004 | 3 | CH_sce_499 | 4 | 30 | 0.0000680565 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_173 | 6 | 7 | 2.16281e-16 |
| Saccharum spontaneum | Chr6B | 3 | CH_ssp_460 | 3 | 4 | 0.0000111867 |
| Triticum aestivum | Chr7D | 3 | CH_tae_1100 | 4 | 25 | 0.000146589 |
| Triticum aestivum | Chr6D | 3 | CH_tae_383 | 5 | 11 | 0.00000000297434 |
| Triticum aestivum | Chr7B | 3 | CH_tae_621 | 4 | 7 | 0.000000408886 |
| Triticum aestivum | Chr6B | 3 | CH_tae_720 | 4 | 9 | 0.00000147066 |
| Triticum turgidum | chr6A | 3 | CH_ttu_628 | 3 | 9 | 0.00040245 |
| Triticum turgidum | chr6B | 3 | CH_ttu_665 | 3 | 10 | 0.000574751 |
| Brachypodium distachyon | Bd2 | 4 | CH_bdi_166 | 3 | 4 | 0.0000260015 |
| Brachypodium distachyon | Bd3 | 4 | CH_bdi_289 | 3 | 9 | 0.000544874 |
| Ceratophyllum demersum | 3 | 4 | CH_cde_76 | 3 | 3 | 0.00000906696 |
| Eragrostis curvula | Contig25 | 4 | CH_ecu_215 | 4 | 4 | 0.000000000416192 |
| Eragrostis curvula | Contig25 | 4 | CH_ecu_677 | 4 | 53 | 0.000120558 |
| Hordeum vulgare | chr6H | 4 | CH_hvu_27 | 7 | 19 | 0.00000000000000137062 |
| Miscanthus sinensis | Chr09 | 4 | CH_msi_40 | 6 | 8 | 0.00000000000000220033 |
| Miscanthus sinensis | Chr06 | 4 | CH_msi_403 | 3 | 8 | 0.000154037 |
| Oryza alta | GWHAZTO00000008 | 4 | CH_oal_565 | 3 | 12 | 0.000152577 |
| Oryza brachyantha | 8 | 4 | CH_obr_223 | 3 | 12 | 0.0000987646 |
| Oryza sativa ssp. indica | Chr8 | 4 | CH_osaindica_232 | 3 | 12 | 0.0000307973 |
| Oryza sativa Kitaake | Chr4 | 4 | CH_osak_211 | 3 | 3 | 0.00000135914 |
| Oryza sativa Kitaake | Chr8 | 4 | CH_osak_418 | 3 | 14 | 0.000493428 |
| Oryza sativa ssp. japonica | chr08 | 4 | CH_osa_317 | 3 | 19 | 0.000141654 |
| Sorghum bicolor | Chr05 | 4 | CH_sbi_13 | 8 | 9 | 5.1277e-22 |
| Secale cereale | GWHASIY00000004 | 4 | CH_sce_499 | 4 | 30 | 0.0000680565 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_173 | 6 | 7 | 2.16281e-16 |
| Saccharum spontaneum | Chr6B | 4 | CH_ssp_460 | 3 | 4 | 0.0000111867 |
| Triticum aestivum | Chr7D | 4 | CH_tae_1100 | 4 | 25 | 0.000146589 |
| Triticum aestivum | Chr6D | 4 | CH_tae_383 | 5 | 11 | 0.00000000297434 |
| Triticum aestivum | Chr7B | 4 | CH_tae_621 | 4 | 7 | 0.000000408886 |
| Triticum aestivum | Chr6B | 4 | CH_tae_720 | 4 | 9 | 0.00000147066 |
| Triticum turgidum | chr6A | 4 | CH_ttu_628 | 3 | 9 | 0.00040245 |
| Triticum turgidum | chr6B | 4 | CH_ttu_665 | 3 | 10 | 0.000574751 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |