Functional clusters

Information

  • Type Gene Ontology
  • Description chloroplast

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aegilops tauschii 1D 3 CH_ata_22 24 43 6.58468e-17
Aegilops tauschii 5D 3 CH_ata_79 18 34 0.00000000237329
Arabidopsis thaliana ChrC 3 CH_ath_13 30 30 7.37919e-28
Brachypodium distachyon Bd2 3 CH_bdi_116 11 14 0.00000135178
Cenchrus purpureus GWHAORA00000012 3 CH_cpu_111 16 17 0.000000000000477333
Cenchrus purpureus GWHAORA00000007 3 CH_cpu_254 11 11 0.0000000162114
Lolium perenne Lp_scaffold_5331 3 CH_lpe_273 10 22 0.0000428639
Lolium perenne Lp_chr7_0.1 3 CH_lpe_33 18 33 0.0000000000000838813
Lolium perenne Lp_scaffold_891 3 CH_lpe_412 9 21 0.000593743
Magnolia biondii Chr02 3 CH_mbi_596 11 25 0.000394688
Oryza sativa ssp. indica chrC 3 CH_osaindica_136 13 22 0.000000306328
Populus trichocarpa Chr13 3 CH_ptr_36 30 39 8.38207e-21
Sorghum bicolor Chr03 3 CH_sbi_88 24 59 0.00000000147539
Secale cereale GWHASIY00000004 3 CH_sce_13 30 41 1.97986e-22
Secale cereale GWHASIY00000002 3 CH_sce_366 24 80 0.00000736346
Secale cereale GWHASIY00000006 3 CH_sce_516 12 22 0.0000964761
Sequoiadendron giganteum chr8 3 CH_sgi_1049 8 9 0.0000952108
Setaria viridis Chr_09 3 CH_svi_39 17 19 0.00000000000000450786
Triticum dicoccoides 4A 3 CH_tdi_100 26 64 0.0000000000506602
Triticum turgidum chr3B 3 CH_ttu_18 27 35 3.06458e-21
Vanilla planifolia JADCNL010000483.1 3 CH_vpl_17 29 58 0.000000000000135428
Zostera marina scaffold_70 3 CH_zosmarina_2 25 26 4.84787e-21
Aegilops tauschii 1D 4 CH_ata_22 24 43 6.58468e-17
Aegilops tauschii 5D 4 CH_ata_79 18 34 0.00000000237329
Arabidopsis thaliana ChrC 4 CH_ath_13 30 30 7.37919e-28
Brachypodium distachyon Bd2 4 CH_bdi_116 11 14 0.00000135178
Cenchrus purpureus GWHAORA00000012 4 CH_cpu_111 16 17 0.000000000000477333
Cenchrus purpureus GWHAORA00000007 4 CH_cpu_254 11 11 0.0000000162114
Lolium perenne Lp_scaffold_5331 4 CH_lpe_273 10 22 0.0000428639
Lolium perenne Lp_chr7_0.1 4 CH_lpe_33 18 33 0.0000000000000838813
Lolium perenne Lp_scaffold_891 4 CH_lpe_412 9 21 0.000593743
Magnolia biondii Chr02 4 CH_mbi_596 11 25 0.000394688
Oryza sativa ssp. indica chrC 4 CH_osaindica_136 13 22 0.000000306328
Populus trichocarpa Chr13 4 CH_ptr_36 30 39 8.38207e-21
Sorghum bicolor Chr03 4 CH_sbi_88 24 59 0.00000000147539
Secale cereale GWHASIY00000004 4 CH_sce_13 30 41 1.97986e-22
Secale cereale GWHASIY00000002 4 CH_sce_366 24 80 0.00000736346
Secale cereale GWHASIY00000006 4 CH_sce_516 12 22 0.0000964761
Sequoiadendron giganteum chr8 4 CH_sgi_1049 8 9 0.0000952108
Setaria viridis Chr_09 4 CH_svi_39 17 19 0.00000000000000450786
Triticum dicoccoides 4A 4 CH_tdi_100 26 64 0.0000000000506602
Triticum turgidum chr3B 4 CH_ttu_18 27 35 3.06458e-21
Vanilla planifolia JADCNL010000483.1 4 CH_vpl_17 29 58 0.000000000000135428
Zostera marina scaffold_70 4 CH_zosmarina_2 25 26 4.84787e-21

Available child term results

Ontology identifier Description Number of clusters
GO:0009503 thylakoid light-harvesting complex 4
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 6
GO:0009544 chloroplast ATP synthase complex 4
GO:0009570 chloroplast stroma 2
GO:0009706 chloroplast inner membrane 6
GO:0009941 chloroplast envelope 10
GO:0010006 Toc complex 2
GO:0010007 magnesium chelatase complex 2
GO:0010287 plastoglobule 8
GO:0030093 chloroplast photosystem I 4
GO:0031357 integral component of chloroplast inner membrane 8
GO:0031897 Tic complex 14
GO:0042644 chloroplast nucleoid 4
GO:0043253 chloroplast ribosome 2
GO:0061927 TOC-TIC supercomplex I 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001