Functional clusters

Information

  • Type Gene Ontology
  • Description endoplasmic reticulum

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr2 3 CH_ath_125 18 67 0.00000000392142
Arabidopsis thaliana Chr2 3 CH_ath_161 18 75 0.0000000329934
Arabidopsis thaliana Chr5 3 CH_ath_196 12 28 0.000000108023
Arabidopsis thaliana Chr2 3 CH_ath_238 17 77 0.000000624696
Arabidopsis thaliana Chr2 3 CH_ath_252 17 80 0.00000120231
Arabidopsis thaliana Chr3 3 CH_ath_317 16 78 0.00000828423
Arabidopsis thaliana Chr2 3 CH_ath_318 15 67 0.00000839939
Arabidopsis thaliana Chr2 3 CH_ath_514 13 58 0.000142434
Amborella trichopoda AmTr_v1.0_scaffold00009 3 CH_atr_290 7 12 0.000391758
Populus trichocarpa Chr06 3 CH_ptr_319 16 63 0.0000498657
Sorghum bicolor Chr04 3 CH_sbi_58 10 10 0.0000000000178715
Arabidopsis thaliana Chr2 4 CH_ath_125 18 67 0.00000000392142
Arabidopsis thaliana Chr2 4 CH_ath_161 18 75 0.0000000329934
Arabidopsis thaliana Chr5 4 CH_ath_196 12 28 0.000000108023
Arabidopsis thaliana Chr2 4 CH_ath_238 17 77 0.000000624696
Arabidopsis thaliana Chr2 4 CH_ath_252 17 80 0.00000120231
Arabidopsis thaliana Chr3 4 CH_ath_317 16 78 0.00000828423
Arabidopsis thaliana Chr2 4 CH_ath_318 15 67 0.00000839939
Arabidopsis thaliana Chr2 4 CH_ath_514 13 58 0.000142434
Amborella trichopoda AmTr_v1.0_scaffold00009 4 CH_atr_290 7 12 0.000391758
Populus trichocarpa Chr06 4 CH_ptr_319 16 63 0.0000498657
Sorghum bicolor Chr04 4 CH_sbi_58 10 10 0.0000000000178715

Available child term results

Ontology identifier Description Number of clusters
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 2
GO:0005784 Sec61 translocon complex 6
GO:0005785 signal recognition particle receptor complex 2
GO:0005787 signal peptidase complex 8
GO:0005789 endoplasmic reticulum membrane 2
GO:0008250 oligosaccharyltransferase complex 2
GO:0009511 plasmodesmatal endoplasmic reticulum 2
GO:0009923 fatty acid elongase complex 54
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0030176 integral component of endoplasmic reticulum membrane 2
GO:0034998 oligosaccharyltransferase I complex 2
GO:0042765 GPI-anchor transamidase complex 2
GO:0043529 GET complex 2
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 4
GO:0071781 endoplasmic reticulum cisternal network 4
GO:0072546 EMC complex 6
GO:1990578 perinuclear endoplasmic reticulum membrane 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001