Functional clusters

Information

  • Type Gene Ontology
  • Description plastid

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_369 3 CH_aag_196 24 70 0.000870624
Arabidopsis thaliana Chr5 3 CH_ath_243 29 74 0.000000793001
Arabidopsis thaliana Chr5 3 CH_ath_301 29 79 0.00000521073
Arabidopsis thaliana Chr5 3 CH_ath_344 23 55 0.0000143394
Arabidopsis thaliana Chr5 3 CH_ath_433 23 57 0.0000526467
Magnolia biondii Chr03 3 CH_mbi_544 22 78 0.000251248
Micromonas commoda Chr_01 3 CH_mco_20 21 43 0.00029945
Sequoiadendron giganteum chr10 3 CH_sgi_1355 7 7 0.000938649
Solanum lycopersicum SL4.0ch00 3 CH_sly_136 12 13 0.0000000172443
Solanum lycopersicum SL4.0ch00 3 CH_sly_85 16 19 0.0000000000379598
Zostera marina Chr03 3 CH_zosmarina_151 28 75 0.000544666
Anthoceros agrestis Sc2ySwM_369 4 CH_aag_196 24 70 0.000870624
Arabidopsis thaliana Chr5 4 CH_ath_243 29 74 0.000000793001
Arabidopsis thaliana Chr5 4 CH_ath_301 29 79 0.00000521073
Arabidopsis thaliana Chr5 4 CH_ath_344 23 55 0.0000143394
Arabidopsis thaliana Chr5 4 CH_ath_433 23 57 0.0000526467
Magnolia biondii Chr03 4 CH_mbi_544 22 78 0.000251248
Micromonas commoda Chr_01 4 CH_mco_20 21 43 0.00029945
Sequoiadendron giganteum chr10 4 CH_sgi_1355 7 7 0.000938649
Solanum lycopersicum SL4.0ch00 4 CH_sly_136 12 13 0.0000000172443
Solanum lycopersicum SL4.0ch00 4 CH_sly_85 16 19 0.0000000000379598
Zostera marina Chr03 4 CH_zosmarina_151 28 75 0.000544666

Available child term results

Ontology identifier Description Number of clusters
GO:0000311 plastid large ribosomal subunit 12
GO:0000312 plastid small ribosomal subunit 6
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0009503 thylakoid light-harvesting complex 4
GO:0009507 chloroplast 44
GO:0009508 plastid chromosome 4
GO:0009509 chromoplast 2
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009526 plastid envelope 6
GO:0009532 plastid stroma 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 6
GO:0009544 chloroplast ATP synthase complex 4
GO:0009547 plastid ribosome 80
GO:0009570 chloroplast stroma 2
GO:0009578 etioplast stroma 2
GO:0009706 chloroplast inner membrane 6
GO:0009941 chloroplast envelope 10
GO:0010006 Toc complex 2
GO:0010007 magnesium chelatase complex 2
GO:0010240 plastid pyruvate dehydrogenase complex 6
GO:0010287 plastoglobule 8
GO:0030093 chloroplast photosystem I 4
GO:0031357 integral component of chloroplast inner membrane 8
GO:0031897 Tic complex 14
GO:0031976 plastid thylakoid 2
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0042644 chloroplast nucleoid 4
GO:0043253 chloroplast ribosome 2
GO:0061927 TOC-TIC supercomplex I 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001