Functional clusters
Information
- Type Gene Ontology
- Description protein storage vacuole
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00059 | 3 | CH_atr_45 | 7 | 23 | 0.00000000000567842 |
| Cenchrus purpureus | GWHAORA00000003 | 3 | CH_cpu_142 | 6 | 8 | 0.0000000000103147 |
| Cenchrus purpureus | GWHAORA00000003 | 3 | CH_cpu_638 | 4 | 11 | 0.000070884 |
| Cenchrus purpureus | GWHAORA00000008 | 3 | CH_cpu_719 | 3 | 3 | 0.000162796 |
| Cenchrus purpureus | GWHAORA00000012 | 3 | CH_cpu_720 | 3 | 3 | 0.000162796 |
| Digitaria exilis | Dexi_CM05836_chr03A | 3 | CH_dex_212 | 4 | 4 | 0.0000000624719 |
| Digitaria exilis | Dexi_CM05836_chr06B | 3 | CH_dex_439 | 3 | 3 | 0.0000633634 |
| Digitaria exilis | Dexi_CM05836_chr03B | 3 | CH_dex_562 | 3 | 4 | 0.000253262 |
| Eragrostis curvula | Contig267 | 3 | CH_ecu_21 | 15 | 30 | 3.12685e-30 |
| Eragrostis curvula | 4 | 3 | CH_ecu_636 | 6 | 67 | 0.0000738194 |
| Eragrostis curvula | Contig1112 | 3 | CH_ecu_70 | 9 | 14 | 5.30314e-18 |
| Eragrostis curvula | Contig50 | 3 | CH_ecu_700 | 3 | 3 | 0.000214865 |
| Elaeis guineensis | EG5.1_Chr7 | 3 | CH_egu_3 | 7 | 7 | 3.06418e-16 |
| Hordeum vulgare | chr2H | 3 | CH_hvu_109 | 6 | 25 | 0.00000000227361 |
| Hordeum vulgare | chr7H | 3 | CH_hvu_273 | 3 | 3 | 0.0000283624 |
| Lolium perenne | Lp_chr2_0 | 3 | CH_lpe_413 | 3 | 8 | 0.000618363 |
| Magnolia biondii | Chr16 | 3 | CH_mbi_467 | 3 | 4 | 0.0000846377 |
| Miscanthus sinensis | Chr14 | 3 | CH_msi_399 | 3 | 4 | 0.000145636 |
| Oryza brachyantha | 6 | 3 | CH_obr_258 | 3 | 4 | 0.000211342 |
| Phyllostachys edulis | hic_scaffold_6 | 3 | CH_ped_248 | 4 | 9 | 0.0000080534 |
| Panicum hallii | Chr03 | 3 | CH_pha_223 | 3 | 3 | 0.0000227692 |
| Physcomitrium patens | Chr15 | 3 | CH_ppa_79 | 3 | 3 | 0.0000368593 |
| Sorghum bicolor | Chr08 | 3 | CH_sbi_112 | 4 | 4 | 0.0000000190632 |
| Secale cereale | GWHASIY00000002 | 3 | CH_sce_102 | 5 | 5 | 0.000000000092493 |
| Setaria italica | scaffold_6 | 3 | CH_sit_265 | 3 | 3 | 0.0000392672 |
| Triticum aestivum | Chr2A | 3 | CH_tae_646 | 4 | 5 | 0.000000631731 |
| Triticum aestivum | Chr2B | 3 | CH_tae_735 | 5 | 20 | 0.00000197343 |
| Triticum turgidum | chr2A | 3 | CH_ttu_621 | 3 | 5 | 0.000383911 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00088.1 | 3 | CH_zjn_57 | 4 | 8 | 0.000000556362 |
| Amborella trichopoda | AmTr_v1.0_scaffold00059 | 4 | CH_atr_45 | 7 | 23 | 0.00000000000567842 |
| Cenchrus purpureus | GWHAORA00000003 | 4 | CH_cpu_142 | 6 | 8 | 0.0000000000103147 |
| Cenchrus purpureus | GWHAORA00000003 | 4 | CH_cpu_638 | 4 | 11 | 0.000070884 |
| Cenchrus purpureus | GWHAORA00000008 | 4 | CH_cpu_719 | 3 | 3 | 0.000162796 |
| Cenchrus purpureus | GWHAORA00000012 | 4 | CH_cpu_720 | 3 | 3 | 0.000162796 |
| Digitaria exilis | Dexi_CM05836_chr03A | 4 | CH_dex_212 | 4 | 4 | 0.0000000624719 |
| Digitaria exilis | Dexi_CM05836_chr06B | 4 | CH_dex_439 | 3 | 3 | 0.0000633634 |
| Digitaria exilis | Dexi_CM05836_chr03B | 4 | CH_dex_562 | 3 | 4 | 0.000253262 |
| Eragrostis curvula | Contig267 | 4 | CH_ecu_21 | 15 | 30 | 3.12685e-30 |
| Eragrostis curvula | 4 | 4 | CH_ecu_636 | 6 | 67 | 0.0000738194 |
| Eragrostis curvula | Contig1112 | 4 | CH_ecu_70 | 9 | 14 | 5.30314e-18 |
| Eragrostis curvula | Contig50 | 4 | CH_ecu_700 | 3 | 3 | 0.000214865 |
| Elaeis guineensis | EG5.1_Chr7 | 4 | CH_egu_3 | 7 | 7 | 3.06418e-16 |
| Hordeum vulgare | chr2H | 4 | CH_hvu_109 | 6 | 25 | 0.00000000227361 |
| Hordeum vulgare | chr7H | 4 | CH_hvu_273 | 3 | 3 | 0.0000283624 |
| Lolium perenne | Lp_chr2_0 | 4 | CH_lpe_413 | 3 | 8 | 0.000618363 |
| Magnolia biondii | Chr16 | 4 | CH_mbi_467 | 3 | 4 | 0.0000846377 |
| Miscanthus sinensis | Chr14 | 4 | CH_msi_399 | 3 | 4 | 0.000145636 |
| Oryza brachyantha | 6 | 4 | CH_obr_258 | 3 | 4 | 0.000211342 |
| Phyllostachys edulis | hic_scaffold_6 | 4 | CH_ped_248 | 4 | 9 | 0.0000080534 |
| Panicum hallii | Chr03 | 4 | CH_pha_223 | 3 | 3 | 0.0000227692 |
| Physcomitrium patens | Chr15 | 4 | CH_ppa_79 | 3 | 3 | 0.0000368593 |
| Sorghum bicolor | Chr08 | 4 | CH_sbi_112 | 4 | 4 | 0.0000000190632 |
| Secale cereale | GWHASIY00000002 | 4 | CH_sce_102 | 5 | 5 | 0.000000000092493 |
| Setaria italica | scaffold_6 | 4 | CH_sit_265 | 3 | 3 | 0.0000392672 |
| Triticum aestivum | Chr2A | 4 | CH_tae_646 | 4 | 5 | 0.000000631731 |
| Triticum aestivum | Chr2B | 4 | CH_tae_735 | 5 | 20 | 0.00000197343 |
| Triticum turgidum | chr2A | 4 | CH_ttu_621 | 3 | 5 | 0.000383911 |
| Zoysia japonica ssp. nagirizaki | Zjn_sc00088.1 | 4 | CH_zjn_57 | 4 | 8 | 0.000000556362 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0000327 | lytic vacuole within protein storage vacuole | 6 |
| GO:0032586 | protein storage vacuole membrane | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |