Functional clusters

Information

  • Type Gene Ontology
  • Description lyase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr10 3 CH_camsi_778 4 4 0.000647848
Rosa chinensis RcHm_v2.0_Chr3 3 CH_rch_664 9 62 0.000301935
Simmondsia chinensis GWHAASQ00000021 3 CH_sci_129 9 42 0.0000369845
Sechium edule LG11 3 CH_sed_193 10 57 0.000141003
Schrenkiella parvula ch3-1 3 CH_spa_202 8 44 0.000720823
Camellia sinensis var. sinensis Chr10 4 CH_camsi_778 4 4 0.000647848
Rosa chinensis RcHm_v2.0_Chr3 4 CH_rch_664 9 62 0.000301935
Simmondsia chinensis GWHAASQ00000021 4 CH_sci_129 9 42 0.0000369845
Sechium edule LG11 4 CH_sed_193 10 57 0.000141003
Schrenkiella parvula ch3-1 4 CH_spa_202 8 44 0.000720823

Available child term results

Ontology identifier Description Number of clusters
GO:0003839 gamma-glutamylcyclotransferase activity 12
GO:0003855 3-dehydroquinate dehydratase activity 8
GO:0003856 3-dehydroquinate synthase activity 10
GO:0003861 3-isopropylmalate dehydratase activity 34
GO:0003904 deoxyribodipyrimidine photo-lyase activity 2
GO:0003913 DNA photolyase activity 8
GO:0003994 aconitate hydratase activity 2
GO:0004014 adenosylmethionine decarboxylase activity 20
GO:0004016 adenylate cyclase activity 18
GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity 6
GO:0004049 anthranilate synthase activity 12
GO:0004056 argininosuccinate lyase activity 14
GO:0004058 aromatic-L-amino-acid decarboxylase activity 4
GO:0004089 carbonate dehydratase activity 158
GO:0004107 chorismate synthase activity 24
GO:0004121 cystathionine beta-lyase activity 6
GO:0004150 dihydroneopterin aldolase activity 20
GO:0004163 diphosphomevalonate decarboxylase activity 4
GO:0004300 enoyl-CoA hydratase activity 2
GO:0004325 ferrochelatase activity 12
GO:0004332 fructose-bisphosphate aldolase activity 14
GO:0004333 fumarate hydratase activity 2
GO:0004351 glutamate decarboxylase activity 86
GO:0004383 guanylate cyclase activity 12
GO:0004408 holocytochrome-c synthase activity 2
GO:0004419 hydroxymethylglutaryl-CoA lyase activity 4
GO:0004424 imidazoleglycerol-phosphate dehydratase activity 10
GO:0004425 indole-3-glycerol-phosphate synthase activity 8
GO:0004451 isocitrate lyase activity 20
GO:0004462 lactoylglutathione lyase activity 20
GO:0004490 methylglutaconyl-CoA hydratase activity 12
GO:0004590 orotidine-5'-phosphate decarboxylase activity 4
GO:0004609 phosphatidylserine decarboxylase activity 40
GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity 40
GO:0004633 phosphopantothenoylcysteine decarboxylase activity 16
GO:0004634 phosphopyruvate hydratase activity 12
GO:0004655 porphobilinogen synthase activity 12
GO:0004664 prephenate dehydratase activity 8
GO:0004730 pseudouridylate synthase activity 6
GO:0004737 pyruvate decarboxylase activity 10
GO:0004793 threonine aldolase activity 16
GO:0004794 L-threonine ammonia-lyase activity 12
GO:0004834 tryptophan synthase activity 20
GO:0004853 uroporphyrinogen decarboxylase activity 6
GO:0008117 sphinganine-1-phosphate aldolase activity 10
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity 2
GO:0008460 dTDP-glucose 4,6-dehydratase activity 14
GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity 12
GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity 6
GO:0008696 4-amino-4-deoxychorismate lyase activity 2
GO:0008732 L-allo-threonine aldolase activity 2
GO:0008792 arginine decarboxylase activity 10
GO:0008836 diaminopimelate decarboxylase activity 14
GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase activity 10
GO:0008935 1,4-dihydroxy-2-naphthoyl-CoA synthase activity 12
GO:0008964 phosphoenolpyruvate carboxylase activity 34
GO:0009899 ent-kaurene synthase activity 34
GO:0009978 allene oxide synthase activity 4
GO:0010298 dihydrocamalexic acid decarboxylase activity 30
GO:0010333 terpene synthase activity 480
GO:0010334 sesquiterpene synthase activity 2
GO:0016508 long-chain-enoyl-CoA hydratase activity 12
GO:0016831 carboxy-lyase activity 8
GO:0016832 aldehyde-lyase activity 2
GO:0016833 oxo-acid-lyase activity 2
GO:0016835 carbon-oxygen lyase activity 6
GO:0016836 hydro-lyase activity 2
GO:0016838 carbon-oxygen lyase activity, acting on phosphates 18
GO:0016841 ammonia-lyase activity 10
GO:0016844 strictosidine synthase activity 172
GO:0016846 carbon-sulfur lyase activity 52
GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity 4
GO:0016984 ribulose-bisphosphate carboxylase activity 4
GO:0018812 3-hydroxyacyl-CoA dehydratase activity 14
GO:0019148 D-cysteine desulfhydrase activity 4
GO:0019171 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity 6
GO:0019172 glyoxalase III activity 32
GO:0030570 pectate lyase activity 98
GO:0033897 ribonuclease T2 activity 184
GO:0033984 indole-3-glycerol-phosphate lyase activity 8
GO:0033987 2-hydroxyisoflavanone dehydratase activity 24
GO:0034002 (R)-limonene synthase activity 8
GO:0034007 S-linalool synthase activity 22
GO:0034768 (E)-beta-ocimene synthase activity 2
GO:0036469 L-tryptophan decarboxylase activity 40
GO:0043722 4-hydroxyphenylacetate decarboxylase activity 34
GO:0045548 phenylalanine ammonia-lyase activity 36
GO:0046570 methylthioribulose 1-phosphate dehydratase activity 4
GO:0047434 indolepyruvate decarboxylase activity 2
GO:0047443 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity 2
GO:0047450 crotonoyl-[acyl-carrier-protein] hydratase activity 4
GO:0047720 indoleacetaldoxime dehydratase activity 14
GO:0047769 arogenate dehydratase activity 12
GO:0047987 hydroperoxide dehydratase activity 2
GO:0048040 UDP-glucuronate decarboxylase activity 8
GO:0050017 L-3-cyanoalanine synthase activity 10
GO:0050080 malonyl-CoA decarboxylase activity 10
GO:0050377 UDP-glucose 4,6-dehydratase activity 2
GO:0050551 myrcene synthase activity 2
GO:0051266 sirohydrochlorin ferrochelatase activity 8
GO:0051575 5'-deoxyribose-5-phosphate lyase activity 2
GO:0052578 alpha-farnesene synthase activity 30
GO:0052683 (Z)-gamma-bisabolene synthase activity 2
GO:0052684 L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity 12
GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity 12
GO:0061929 gamma-glutamylaminecyclotransferase activity 6
GO:0071771 aldehyde decarbonylase activity 54
GO:0080013 (E,E)-geranyllinalool synthase activity 42
GO:0080016 (-)-E-beta-caryophyllene synthase activity 14
GO:0080108 S-alkylthiohydroximate lyase activity 28
GO:0080109 indole-3-acetonitrile nitrile hydratase activity 8
GO:0080146 L-cysteine desulfhydrase activity 2
GO:0102158 very-long-chain 3-hydroxyacyl-CoA dehydratase activity 4
GO:0102210 rhamnogalacturonan endolyase activity 12
GO:0102521 tRNA-4-demethylwyosine synthase activity 4
GO:0102878 (+)-alpha-barbatene synthase activity 20
GO:1990055 phenylacetaldehyde synthase activity 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001