Functional clusters
Information
- Type Gene Ontology
- Description pectate lyase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 3 | CH_aag_52 | 4 | 10 | 0.000000160942 |
| Acer truncatum | chr9 | 3 | CH_acertr_226 | 3 | 3 | 0.0000072239 |
| Acer truncatum | chr11 | 3 | CH_acertr_227 | 3 | 3 | 0.0000072239 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 3 | CH_arhy_457 | 3 | 3 | 0.0000437075 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_521 | 3 | 4 | 0.000174718 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 3 | CH_arhy_605 | 3 | 5 | 0.000436513 |
| Brassica carinata | ChrB02 | 3 | CH_bca_332 | 4 | 6 | 0.00000128146 |
| Brassica carinata | ChrC04 | 3 | CH_bca_596 | 3 | 3 | 0.0000889461 |
| Coffea canephora | chr9 | 3 | CH_ccan_15 | 5 | 16 | 0.000000000000314839 |
| Citrus clementina | scaffold_6 | 3 | CH_ccl_162 | 4 | 6 | 0.0000000961882 |
| Gossypium hirsutum | D13 | 3 | CH_ghi_338 | 4 | 7 | 0.0000060782 |
| Gossypium hirsutum | D05 | 3 | CH_ghi_41 | 8 | 8 | 3.39424e-19 |
| Gossypium hirsutum | A05 | 3 | CH_ghi_453 | 3 | 3 | 0.000143357 |
| Gossypium hirsutum | A06 | 3 | CH_ghi_454 | 3 | 3 | 0.000143357 |
| Gossypium hirsutum | D06 | 3 | CH_ghi_455 | 3 | 3 | 0.000143357 |
| Gossypium hirsutum | D12 | 3 | CH_ghi_456 | 3 | 3 | 0.000143357 |
| Glycine max | Gm18 | 3 | CH_gma_251 | 3 | 3 | 0.0000154295 |
| Gossypium raimondii | Chr10 | 3 | CH_gra_12 | 10 | 10 | 1.35417e-24 |
| Gossypium raimondii | Chr13 | 3 | CH_gra_201 | 4 | 10 | 0.0000408962 |
| Gossypium raimondii | Chr09 | 3 | CH_gra_229 | 4 | 12 | 0.0000961698 |
| Gossypium raimondii | Chr09 | 3 | CH_gra_29 | 7 | 7 | 5.62379e-16 |
| Helianthus annuus | HanXRQChr17 | 3 | CH_han_420 | 3 | 3 | 0.0000257146 |
| Hydrangea macrophylla | Hma1.2p1_0145F.1 | 3 | CH_hma_59 | 4 | 8 | 0.0000000948749 |
| Lupinus albus | Lalb_Chr03 | 3 | CH_lal_36 | 6 | 6 | 0.0000000000000343965 |
| Lonicera japonica | GWHAAZE00000007 | 3 | CH_lonja_204 | 4 | 4 | 0.0000000202766 |
| Magnolia biondii | Chr14 | 3 | CH_mbi_190 | 4 | 8 | 0.0000000735287 |
| Manihot esculenta | Chromosome05 | 3 | CH_mes_172 | 4 | 6 | 0.00000024306 |
| Medicago truncatula | chr8 | 3 | CH_mtr_383 | 4 | 10 | 0.00000287628 |
| Medicago truncatula | chr5 | 3 | CH_mtr_396 | 4 | 11 | 0.00000451733 |
| Petunia axillaris | Peaxi162Scf00451 | 3 | CH_pax_161 | 3 | 3 | 0.0000217185 |
| Punica granatum | NC_045134.1 | 3 | CH_pgr_214 | 3 | 3 | 0.00000962826 |
| Prunus persica | Pp01 | 3 | CH_ppe_227 | 4 | 9 | 0.00000114461 |
| Pisum sativum | chr2LG1 | 3 | CH_psa_104 | 4 | 6 | 0.000000151549 |
| Papaver somniferum | NC_039368.1 | 3 | CH_pso_388 | 3 | 5 | 0.000013479 |
| Quercus lobata | 7 | 3 | CH_qlo_491 | 4 | 9 | 0.000000551595 |
| Quercus lobata | 12 | 3 | CH_qlo_842 | 3 | 6 | 0.000161646 |
| Salix brachista | GWHAAZH00000014 | 3 | CH_sbr_216 | 4 | 22 | 0.0000325952 |
| Simmondsia chinensis | GWHAASQ00000014 | 3 | CH_sci_117 | 3 | 3 | 0.0000144629 |
| Sechium edule | LG11 | 3 | CH_sed_145 | 3 | 3 | 0.00001756 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_1079 | 3 | 3 | 0.000141365 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_14 | 16 | 16 | 4.84384e-42 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_4 | 22 | 22 | 7.84048e-60 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_718 | 4 | 5 | 0.00000103183 |
| Selenicereus undatus | Scaffold_33679 | 3 | CH_sun_126 | 3 | 8 | 0.000161177 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 3 | CH_tpr_241 | 3 | 4 | 0.000125534 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_609 | 3 | CH_tpr_306 | 3 | 5 | 0.000313591 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 3 | CH_tpr_371 | 4 | 31 | 0.000951913 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_177 | 3 | 3 | 0.0000199474 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_66 | 6 | 53 | 0.000000030231 |
| Anthoceros agrestis | Sc2ySwM_228 | 4 | CH_aag_52 | 4 | 10 | 0.000000160942 |
| Acer truncatum | chr9 | 4 | CH_acertr_226 | 3 | 3 | 0.0000072239 |
| Acer truncatum | chr11 | 4 | CH_acertr_227 | 3 | 3 | 0.0000072239 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 4 | CH_arhy_457 | 3 | 3 | 0.0000437075 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_521 | 3 | 4 | 0.000174718 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 4 | CH_arhy_605 | 3 | 5 | 0.000436513 |
| Brassica carinata | ChrB02 | 4 | CH_bca_332 | 4 | 6 | 0.00000128146 |
| Brassica carinata | ChrC04 | 4 | CH_bca_596 | 3 | 3 | 0.0000889461 |
| Coffea canephora | chr9 | 4 | CH_ccan_15 | 5 | 16 | 0.000000000000314839 |
| Citrus clementina | scaffold_6 | 4 | CH_ccl_162 | 4 | 6 | 0.0000000961882 |
| Gossypium hirsutum | D13 | 4 | CH_ghi_338 | 4 | 7 | 0.0000060782 |
| Gossypium hirsutum | D05 | 4 | CH_ghi_41 | 8 | 8 | 3.39424e-19 |
| Gossypium hirsutum | A05 | 4 | CH_ghi_453 | 3 | 3 | 0.000143357 |
| Gossypium hirsutum | A06 | 4 | CH_ghi_454 | 3 | 3 | 0.000143357 |
| Gossypium hirsutum | D06 | 4 | CH_ghi_455 | 3 | 3 | 0.000143357 |
| Gossypium hirsutum | D12 | 4 | CH_ghi_456 | 3 | 3 | 0.000143357 |
| Glycine max | Gm18 | 4 | CH_gma_251 | 3 | 3 | 0.0000154295 |
| Gossypium raimondii | Chr10 | 4 | CH_gra_12 | 10 | 10 | 1.35417e-24 |
| Gossypium raimondii | Chr13 | 4 | CH_gra_201 | 4 | 10 | 0.0000408962 |
| Gossypium raimondii | Chr09 | 4 | CH_gra_229 | 4 | 12 | 0.0000961698 |
| Gossypium raimondii | Chr09 | 4 | CH_gra_29 | 7 | 7 | 5.62379e-16 |
| Helianthus annuus | HanXRQChr17 | 4 | CH_han_420 | 3 | 3 | 0.0000257146 |
| Hydrangea macrophylla | Hma1.2p1_0145F.1 | 4 | CH_hma_59 | 4 | 8 | 0.0000000948749 |
| Lupinus albus | Lalb_Chr03 | 4 | CH_lal_36 | 6 | 6 | 0.0000000000000343965 |
| Lonicera japonica | GWHAAZE00000007 | 4 | CH_lonja_204 | 4 | 4 | 0.0000000202766 |
| Magnolia biondii | Chr14 | 4 | CH_mbi_190 | 4 | 8 | 0.0000000735287 |
| Manihot esculenta | Chromosome05 | 4 | CH_mes_172 | 4 | 6 | 0.00000024306 |
| Medicago truncatula | chr8 | 4 | CH_mtr_383 | 4 | 10 | 0.00000287628 |
| Medicago truncatula | chr5 | 4 | CH_mtr_396 | 4 | 11 | 0.00000451733 |
| Petunia axillaris | Peaxi162Scf00451 | 4 | CH_pax_161 | 3 | 3 | 0.0000217185 |
| Punica granatum | NC_045134.1 | 4 | CH_pgr_214 | 3 | 3 | 0.00000962826 |
| Prunus persica | Pp01 | 4 | CH_ppe_227 | 4 | 9 | 0.00000114461 |
| Pisum sativum | chr2LG1 | 4 | CH_psa_104 | 4 | 6 | 0.000000151549 |
| Papaver somniferum | NC_039368.1 | 4 | CH_pso_388 | 3 | 5 | 0.000013479 |
| Quercus lobata | 7 | 4 | CH_qlo_491 | 4 | 9 | 0.000000551595 |
| Quercus lobata | 12 | 4 | CH_qlo_842 | 3 | 6 | 0.000161646 |
| Salix brachista | GWHAAZH00000014 | 4 | CH_sbr_216 | 4 | 22 | 0.0000325952 |
| Simmondsia chinensis | GWHAASQ00000014 | 4 | CH_sci_117 | 3 | 3 | 0.0000144629 |
| Sechium edule | LG11 | 4 | CH_sed_145 | 3 | 3 | 0.00001756 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_1079 | 3 | 3 | 0.000141365 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_14 | 16 | 16 | 4.84384e-42 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_4 | 22 | 22 | 7.84048e-60 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_718 | 4 | 5 | 0.00000103183 |
| Selenicereus undatus | Scaffold_33679 | 4 | CH_sun_126 | 3 | 8 | 0.000161177 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 4 | CH_tpr_241 | 3 | 4 | 0.000125534 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_609 | 4 | CH_tpr_306 | 3 | 5 | 0.000313591 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 4 | CH_tpr_371 | 4 | 31 | 0.000951913 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_177 | 3 | 3 | 0.0000199474 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_66 | 6 | 53 | 0.000000030231 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |