Functional clusters
Information
- Type Gene Ontology
- Description phenylalanine ammonia-lyase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica rapa | A04 | 3 | CH_bra_120 | 3 | 5 | 0.00000331676 |
| Corylus avellana | 11 | 3 | CH_cav_124 | 3 | 5 | 0.000000352659 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_271 | 2 | 2 | 0.000227204 |
| Cucumis melo | chr08 | 3 | CH_cme_14 | 7 | 8 | 9.5318e-20 |
| Davidia involucrata | GWHABJS00000004 | 3 | CH_din_405 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 3 | CH_eca_145 | 3 | 4 | 0.00000042281 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 3 | CH_eca_481 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr07 | 3 | CH_egr_181 | 5 | 5 | 0.00000000000000492906 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_461 | 2 | 2 | 0.000514007 |
| Marchantia polymorpha | scaffold_70 | 3 | CH_mpo_21 | 5 | 11 | 0.000000000237776 |
| Oryza sativa ssp. japonica | chr02 | 3 | CH_osa_91 | 4 | 6 | 0.000000000835039 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_428 | 2 | 2 | 0.000578001 |
| Rhododendron simsii | chr03 | 3 | CH_rsi_189 | 3 | 3 | 0.0000000624652 |
| Salix brachista | GWHAAZH00000008 | 3 | CH_sbr_131 | 3 | 3 | 0.000000119127 |
| Solanum tuberosum | ST4.03ch09 | 3 | CH_stu_121 | 4 | 4 | 0.0000000000508729 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_235 | 3 | CH_tpr_129 | 3 | 5 | 0.0000030075 |
| Tripterygium wilfordii | NC_052252.1 | 3 | CH_twi_330 | 2 | 2 | 0.00083682 |
| Vanilla planifolia | CM028152.1 | 3 | CH_vpl_90 | 3 | 5 | 0.000000327536 |
| Brassica rapa | A04 | 4 | CH_bra_120 | 3 | 5 | 0.00000331676 |
| Corylus avellana | 11 | 4 | CH_cav_124 | 3 | 5 | 0.000000352659 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_271 | 2 | 2 | 0.000227204 |
| Cucumis melo | chr08 | 4 | CH_cme_14 | 7 | 8 | 9.5318e-20 |
| Davidia involucrata | GWHABJS00000004 | 4 | CH_din_405 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 4 | CH_eca_145 | 3 | 4 | 0.00000042281 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 4 | CH_eca_481 | 2 | 2 | 0.000942317 |
| Eucalyptus grandis | Chr07 | 4 | CH_egr_181 | 5 | 5 | 0.00000000000000492906 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_461 | 2 | 2 | 0.000514007 |
| Marchantia polymorpha | scaffold_70 | 4 | CH_mpo_21 | 5 | 11 | 0.000000000237776 |
| Oryza sativa ssp. japonica | chr02 | 4 | CH_osa_91 | 4 | 6 | 0.000000000835039 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_428 | 2 | 2 | 0.000578001 |
| Rhododendron simsii | chr03 | 4 | CH_rsi_189 | 3 | 3 | 0.0000000624652 |
| Salix brachista | GWHAAZH00000008 | 4 | CH_sbr_131 | 3 | 3 | 0.000000119127 |
| Solanum tuberosum | ST4.03ch09 | 4 | CH_stu_121 | 4 | 4 | 0.0000000000508729 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_235 | 4 | CH_tpr_129 | 3 | 5 | 0.0000030075 |
| Tripterygium wilfordii | NC_052252.1 | 4 | CH_twi_330 | 2 | 2 | 0.00083682 |
| Vanilla planifolia | CM028152.1 | 4 | CH_vpl_90 | 3 | 5 | 0.000000327536 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |