Functional clusters

Information

  • Type Gene Ontology
  • Description glutamate decarboxylase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group16 3 CH_ach_263 2 2 0.000814819
Actinidia chinensis Lachesis_group11 3 CH_ach_264 2 2 0.000814819
Actinidia chinensis Lachesis_group26 3 CH_ach_265 2 2 0.000814819
Arabidopsis lyrata scaffold_5 3 CH_aly_326 2 2 0.000660044
Avicennia marina ScioBoG_102835_HRSCAF_103059 3 CH_ama_111 2 2 0.000517331
Aquilegia oxysepala CHR03 3 CH_aox_22 5 22 0.00000000000816695
Arabidopsis thaliana Chr2 3 CH_ath_548 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00024 3 CH_atr_62 4 13 0.00000000107511
Brassica carinata ChrB01 3 CH_bca_480 3 6 0.0000242656
Brassica napus C03 3 CH_bna_316 3 4 0.000006771
Brassica napus A03 3 CH_bna_409 3 8 0.0000338426
Brassica napus C03 3 CH_bna_431 3 11 0.0000592137
Brassica oleracea C3 3 CH_bol_211 3 6 0.00000916307
Beta vulgaris Chr6_EL10_PGA_scaffold0 3 CH_bvu_104 3 4 0.00000082246
Camellia sinensis var. sinensis Chr12 3 CH_camsi_602 2 2 0.000137564
Cannabis sativa NC_044373.1 3 CH_cansat_145 3 7 0.00000226302
Corylus avellana 7 3 CH_cav_229 3 13 0.0000503741
Coffea canephora chr7 3 CH_ccan_308 2 4 0.000255531
Ceratophyllum demersum 3 3 CH_cde_26 5 25 0.00000000194736
Cardamine hirsuta Chr5 3 CH_chi_376 2 2 0.000691204
Citrullus lanatus CG_Chr01 3 CH_cla_47 3 3 0.000000236102
Cucumis melo chr09 3 CH_cme_90 3 3 0.0000000667579
Davidia involucrata GWHABJS00000018 3 CH_din_369 2 2 0.000500125
Glycine max Gm08 3 CH_gma_173 3 3 0.000000259319
Lupinus albus Lalb_Chr15 3 CH_lal_371 2 2 0.000524824
Magnolia biondii Chr19 3 CH_mbi_92 4 6 0.0000000000773179
Medicago truncatula chr5 3 CH_mtr_683 2 2 0.000410863
Nelumbo nucifera chr4 3 CH_nnu_204 3 36 0.0000992613
Olea europaea chr7 3 CH_oeu_227 2 2 0.000160137
Prunus persica Pp03 3 CH_ppe_428 2 3 0.000447577
Papaver somniferum NC_039367.1 3 CH_pso_244 3 3 0.000000125626
Populus trichocarpa Chr04 3 CH_ptr_450 2 2 0.000867002
Phaseolus vulgaris Chr02 3 CH_pvu_135 3 3 0.000000283418
Quercus lobata 3 3 CH_qlo_969 2 2 0.000516289
Rhododendron simsii chr09 3 CH_rsi_409 2 2 0.000193592
Salvia bowleyana GWHASIU00000006 3 CH_sbo_451 2 2 0.00045498
Salix brachista GWHAAZH00000004 3 CH_sbr_388 2 2 0.000945209
Sechium edule LG03 3 CH_sed_273 2 2 0.000713419
Sequoiadendron giganteum chr6 3 CH_sgi_232 5 6 0.0000000000000638672
Trifolium pratense Tp57577_TGAC_v2_LG4 3 CH_tpr_328 2 2 0.000454184
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_370 2 3 0.00083625
Vigna mungo CM024069.1 3 CH_vmu_150 3 8 0.0000294335
Vitis vinifera chr1 3 CH_vvi_332 2 2 0.000228189
Actinidia chinensis Lachesis_group16 4 CH_ach_263 2 2 0.000814819
Actinidia chinensis Lachesis_group11 4 CH_ach_264 2 2 0.000814819
Actinidia chinensis Lachesis_group26 4 CH_ach_265 2 2 0.000814819
Arabidopsis lyrata scaffold_5 4 CH_aly_326 2 2 0.000660044
Avicennia marina ScioBoG_102835_HRSCAF_103059 4 CH_ama_111 2 2 0.000517331
Aquilegia oxysepala CHR03 4 CH_aox_22 5 22 0.00000000000816695
Arabidopsis thaliana Chr2 4 CH_ath_548 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00024 4 CH_atr_62 4 13 0.00000000107511
Brassica carinata ChrB01 4 CH_bca_480 3 6 0.0000242656
Brassica napus C03 4 CH_bna_316 3 4 0.000006771
Brassica napus A03 4 CH_bna_409 3 8 0.0000338426
Brassica napus C03 4 CH_bna_431 3 11 0.0000592137
Brassica oleracea C3 4 CH_bol_211 3 6 0.00000916307
Beta vulgaris Chr6_EL10_PGA_scaffold0 4 CH_bvu_104 3 4 0.00000082246
Camellia sinensis var. sinensis Chr12 4 CH_camsi_602 2 2 0.000137564
Cannabis sativa NC_044373.1 4 CH_cansat_145 3 7 0.00000226302
Corylus avellana 7 4 CH_cav_229 3 13 0.0000503741
Coffea canephora chr7 4 CH_ccan_308 2 4 0.000255531
Ceratophyllum demersum 3 4 CH_cde_26 5 25 0.00000000194736
Cardamine hirsuta Chr5 4 CH_chi_376 2 2 0.000691204
Citrullus lanatus CG_Chr01 4 CH_cla_47 3 3 0.000000236102
Cucumis melo chr09 4 CH_cme_90 3 3 0.0000000667579
Davidia involucrata GWHABJS00000018 4 CH_din_369 2 2 0.000500125
Glycine max Gm08 4 CH_gma_173 3 3 0.000000259319
Lupinus albus Lalb_Chr15 4 CH_lal_371 2 2 0.000524824
Magnolia biondii Chr19 4 CH_mbi_92 4 6 0.0000000000773179
Medicago truncatula chr5 4 CH_mtr_683 2 2 0.000410863
Nelumbo nucifera chr4 4 CH_nnu_204 3 36 0.0000992613
Olea europaea chr7 4 CH_oeu_227 2 2 0.000160137
Prunus persica Pp03 4 CH_ppe_428 2 3 0.000447577
Papaver somniferum NC_039367.1 4 CH_pso_244 3 3 0.000000125626
Populus trichocarpa Chr04 4 CH_ptr_450 2 2 0.000867002
Phaseolus vulgaris Chr02 4 CH_pvu_135 3 3 0.000000283418
Quercus lobata 3 4 CH_qlo_969 2 2 0.000516289
Rhododendron simsii chr09 4 CH_rsi_409 2 2 0.000193592
Salvia bowleyana GWHASIU00000006 4 CH_sbo_451 2 2 0.00045498
Salix brachista GWHAAZH00000004 4 CH_sbr_388 2 2 0.000945209
Sechium edule LG03 4 CH_sed_273 2 2 0.000713419
Sequoiadendron giganteum chr6 4 CH_sgi_232 5 6 0.0000000000000638672
Trifolium pratense Tp57577_TGAC_v2_LG4 4 CH_tpr_328 2 2 0.000454184
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_370 2 3 0.00083625
Vigna mungo CM024069.1 4 CH_vmu_150 3 8 0.0000294335
Vitis vinifera chr1 4 CH_vvi_332 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001